Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62870 1017 / 0 unknown protein AT1G12380 990 / 0 unknown protein AT3G17450 56 / 9e-08 hAT dimerisation domain-containing protein (.1) AT1G79740 49 / 1e-05 hAT transposon superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G115900 [exp] 1401 / 0 AT1G62870 1028 / 0.0 unknown protein Potri.015G130800 [exp] 940 / 0 AT1G12380 899 / 0.0 unknown protein Potri.012G129100 [exp] 926 / 0 AT1G12380 890 / 0.0 unknown protein Potri.002G188400 [exp] 52 / 3e-06 AT3G17450 960 / 0.0 hAT dimerisation domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004325 [exp] 994 / 0 AT1G62870 977 / 0.0 unknown protein Lus10024556 [exp] 768 / 0 AT1G12380 797 / 0.0 unknown protein Lus10032194 [exp] 761 / 0 AT1G12380 788 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G116600.1 pacid=42793051 polypeptide=Potri.001G116650.1.p locus=Potri.001G116600 ID=Potri.001G116600.1.v4.1 annot-version=v4.1 ATGGCAACAACAACTAACACAGCAACTACACCACCACCACCACCACAACAACAAGTAGATACAGCCATGGCAGAAGAGCTAACAGCAAAGGCAGCTCACA AGAGATATGAAGGTTTGGTGATGGTAAGGACCAAAGCAATAAAAGGAAAAGGCGCGTGGTATTGGGCTCATTTAGAGCCTATGCTGGTCCACAACACCGA CACTGGCCTTCCTAAAGCTGTGAAGCTACGGTGTTCATTTTGCGACGCCGTTTTCTCCGCTTCCAATCCCTCCAGAACTGCCTCTGAGCATCTGAAACGT GGTACTTGTCCTAATTTTAACTCTCTACCGAAACCCATTTCTTCAATCTCACCCAACACTGCCTTATTGCCTTCTCCTTCTTGCGGTGGCGGTGGCGCTA CAGTAGTGCATACTAGTAGTAATAGGAAGCGACCTGTCGTTTCTAGTTCAGGAATTTCTGGTTCTGGTGGCGTTGCATCATCAACGTATCCAGTGACAGC TGTGGGTAGTACGTACCAAGTGAGTCCTCTTGCTATCGTCGATCCATCACGATTCTCAGATGAGATAGCTATGTTGCCACAACAACCACATTTGATGTTG TCTGGTGGCAAAGATGATTTAGGTGCTTTAGCTATGTTGGAAGATAGTGTAAAAAAGTTAAAGAGTCCTAAAACTTTGCCAGGACAAGCTCTGAGTAAGA CCCAGATTGACTGCGCGTTTGATTATTTAGCTGATTGGGTTTACGAGTCTTGTGGGTCTGTGTCGTTTACTAGTTTAGAGCATCCAAAGTTCAGGGCTTT TCTGAATCAAGTTGGGTTGCCTGTGGTTTCAAGAAGGGATTTTGTTGGTGGGAGATTGAATGTTAAGTACGAGGAAGCTAGGGCTGAGTCTGAAGCGAGG ATTAGAGATGCTATGTTTTTTCAGATTGCGTCAGACGGGTGGAAGGTGAAGAGTAATGGGGGTTTTGGTGATGTAAATTTGGTTAATTTGACAGTGAATT TGCCTAATGGAACTGGTTTGTATAGGAGAGCTGTGTTTGTTAGTGGTTCAGTGCCTTCCAAATATGCAGAGGAGGTTTTTTGGGAGACTATAACAGGCAT CTGCGGGAGTCTTGTGCAACAGTGTGTAGGGATAGTTGCAGACAGGTTTAAGGCTAAGGCATTGAGGAATTTAGAGAACCAGAACCATTGGATGGTCAAT CTTTCTTGTCAGTTACAAGGGTTCACTAGTTTGATTAAGGATTTTAGTAAGGAGCTTCCACTGTTCAGGACTGTTAGTGAGAATTGCTTCAAGCTTGCAA GTTTTATCAATAATAAGACACCAATTCGAAATAGTTTCCACAAATATCAATTGCAAGAGTACGGGAATGCAGGATTGTTGAGAGTGCCCTTGCGGGGGTA TGAGAAGATGGATTTTGGACCTGTGTATACAATGCTAGAGGATATAATGAGCTCAGCTCAAGCATTGCAGTTGGTCTTGCAAGATGAATCGTATAAGATA GTATCCATGGAGGATCCTACTTCAAGAGAAGTTGCTGAGATGATTAGAGATGTGGGGTTTTGGAATGATTTGGATGCGGTGCATTCGCTAGTTAAGTTGA TCAAGGAAATGGCTCAAGAGATTGAGATAGAGAGGCCATTAGTAGGGCAATGTCTGCCGCTATGGGATGAACTTAGAGCAAAAGTGAAGGATTGGTGTTC AAAGTTCCACATTGCTGAAGGAGCAGTGGAGAAAGTGATCGAAAGACGATTCAAGAAGAATTATCATCCTGCTTGGGCTGCGGCTTACATACTAGATCCA CTTTATTTGCTGAGGGACAACAGTGGCAAATACCTTCCTCCTTTCAAGTGCTTGACCCCGGAGCAGGAAAAGGATGTAGACAAGCTTATAACCAGGCTTG TTTCAAGGGAGGAGGCTCATATTGCACTGATGGAACTCATGAAATGGAGAACAGAAGGGCTTGATCCTGTGTATGCAAGGGCTGTCCAGATGAAGGAGAG GGATCCCATTACAGGAAAGATGAGGATAGTAAATCCCCAGAGTAGTAGGCTTGTCTGGGAGACTTATCTTACTGAGTTCAAGTCACTAGGGAAAGTTGCA GTTAGGCTTATTTTTCTTCATGCCACTTCATGCGGGTTCAAATGCAATTGGTCTTTGCTGAGATGGGTGTGTGCCCATGGGCACTCAAGGGAAGGCATGG ACAAGGTGCAAAAGTTGATATTTATTGCAGCTCACTCAAAGCTTGATAGGCGGGAGGTTTTGAGCGATGAAGATAAGGATGCAGATCTCTTTGCATTGGC AAATGGTGAGGATGATGTGCTAAACGAGGTTCTTGTTGATACATCCTCAGTAAGCGTTCGACAAAGATATTGTTGGACTGGAGAAACCACCGTAAGATTG TTGGATGTTAGTACAATGCCATGGACAATGATTAAAGGTGGAATTCTGCCAGAAGGATCCAAGGACTTGACTTGA
AA sequence Show only first row Show all	>Potri.001G116600.1 pacid=42793051 polypeptide=Potri.001G116650.1.p locus=Potri.001G116600 ID=Potri.001G116600.1.v4.1 annot-version=v4.1 MATTTNTATTPPPPPQQQVDTAMAEELTAKAAHKRYEGLVMVRTKAIKGKGAWYWAHLEPMLVHNTDTGLPKAVKLRCSFCDAVFSASNPSRTASEHLKR GTCPNFNSLPKPISSISPNTALLPSPSCGGGGATVVHTSSNRKRPVVSSSGISGSGGVASSTYPVTAVGSTYQVSPLAIVDPSRFSDEIAMLPQQPHLML SGGKDDLGALAMLEDSVKKLKSPKTLPGQALSKTQIDCAFDYLADWVYESCGSVSFTSLEHPKFRAFLNQVGLPVVSRRDFVGGRLNVKYEEARAESEAR IRDAMFFQIASDGWKVKSNGGFGDVNLVNLTVNLPNGTGLYRRAVFVSGSVPSKYAEEVFWETITGICGSLVQQCVGIVADRFKAKALRNLENQNHWMVN LSCQLQGFTSLIKDFSKELPLFRTVSENCFKLASFINNKTPIRNSFHKYQLQEYGNAGLLRVPLRGYEKMDFGPVYTMLEDIMSSAQALQLVLQDESYKI VSMEDPTSREVAEMIRDVGFWNDLDAVHSLVKLIKEMAQEIEIERPLVGQCLPLWDELRAKVKDWCSKFHIAEGAVEKVIERRFKKNYHPAWAAAYILDP LYLLRDNSGKYLPPFKCLTPEQEKDVDKLITRLVSREEAHIALMELMKWRTEGLDPVYARAVQMKERDPITGKMRIVNPQSSRLVWETYLTEFKSLGKVA VRLIFLHATSCGFKCNWSLLRWVCAHGHSREGMDKVQKLIFIAAHSKLDRREVLSDEDKDADLFALANGEDDVLNEVLVDTSSVSVRQRYCWTGETTVRL LDVSTMPWTMIKGGILPEGSKDLT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G62870			unknown protein		Potri.001G116600 [exp]	0	1
AT3G11590			unknown protein		Potri.016G074300 [exp]	3.60	0.8969
AT1G62870			unknown protein		Potri.003G115900 [exp]	4.35	0.8319
AT4G14010		RALFL32	ralf-like 32 (.1)		Potri.017G059900 [exp]	5.47	0.8441
AT5G05830			RING/FYVE/PHD zinc finger supe...		Potri.011G068800 [exp]	5.47	0.8758
AT4G24760			alpha/beta-Hydrolases superfam...		Potri.012G090800 [exp]	14.56	0.8615
AT2G47500			P-loop nucleoside triphosphate...		Potri.014G125700 [exp]	16.73	0.8565
AT3G55420			unknown protein		Potri.010G203900 [exp]	19.18	0.8269
AT2G38970			Zinc finger (C3HC4-type RING f...		Potri.008G038450 [exp]	21.35	0.8515
AT1G74690		IQD31	IQ-domain 31 (.1)		Potri.015G063600 [exp]	21.70	0.8659
AT1G16860			Ubiquitin-specific protease fa...		Potri.010G252000 [exp]	23.21	0.8509

Compare expression of checked genes

Potri.001G116600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.