Plant FIBer expression Database

Pt-PHR1.2 (Potri.001G116800) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-PHR1.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G12370 788 / 0 UVR2, PHR1 UV RESISTANCE 2, photolyase 1 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024557
[exp]
827 / 0 AT1G12370 777 / 0.0 UV RESISTANCE 2, photolyase 1 (.1.2)
Lus10032195
[exp]
818 / 0 AT1G12370 766 / 0.0 UV RESISTANCE 2, photolyase 1 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0039 HUP PF00875 DNA_photolyase DNA photolyase
CL0039 PF03441 FAD_binding_7 FAD binding domain of DNA photolyase
Representative CDS sequence
>Potri.001G116800.2 pacid=42791058 polypeptide=Potri.001G116800.2.p locus=Potri.001G116800 ID=Potri.001G116800.2.v4.1 annot-version=v4.1
ATGGCCTCTCTATCTTCCCCGCCAACCCAAAACACCATCGTCCAACCGGGACGGATCCGGGTCATCAAAGAAGGATCCAGAGGGCAAGTGGGCGGTGGTC
CTGTTGTTTACTGGATGTTTAGAGATCAACGACTTCAAGACAACTGGGCTTTGATCCATGCCGTTGATCAGGCTAACAGGAGCAATGTGCCTGTAGCTGT
GGCATTCAATTTGTTTGATCAGTTCTTGGGGGCCAAAGCAAGACAATTAGGGTTTATGTTAAGGGGTTTGTGTCAGCTTCAAAGTCATATTGAAGAGACA
CTTCAGATCCCATTTTTCTTGTTCCTGGGAGAAGCTGAAGAGACTATACCAGCATTCTTAAAAGACTGTGGGGCTTCACTTTTAGTTACTGATTTTTCAC
CTCTTAGACAATTTCGTACATGCCAAGATGAAATTTGTAAGAGAGTAAGTGATTCAGTGACCATACATGAAGTTGATGCTCATAATGTTGTACCTATTTG
GGTGGCGTCAGAGAAGTTGGAATACAGTGCTAGGACTTTAAGGGGTAAGATAAATAAATTGCTACCTGAGTACCTCATTGATTTCCCAATGTTACAACTG
CCGAAGAACAAGTGGGTTGCAGCTACAAAGCAGTCAATTGATTGGAATGATCTCATTGACAATGTTTTGAGGAAAGGGGCAGAAGTTCCTGAAATCAAAT
GGTGTGAGCCAGGAGAAGATGCAGCAATGGAAGTGTTGATGGGAAGTAAAGATGGATTCTTGACGCAAAGGTTGAAGAATTATTCTACAGATAGGAATAA
CCCACTAAAACCTAAAGGGCTCTCCGGTCTGTCTCCATATCTTCATTTTGGGCAGATTTCTGCACAGCGGTGTGCCTTGGAGGCACGTAAAGTGAGGAAT
CTTAGCCCTCAGTCAGCCGATGCATTTTTGGAGGAGTTGATTGTGCGTAGAGAACTTGCGGACAACTTTTGCTTTTACCAGCCCAATTATGATTCCATAC
ATGGGGCATGGGAGTGGGCACGTAAGACCTTGGCTGACCATGCTTCTGACAAGCGAGAACATATTTACTCGAAAGAGCAATTAGAGAAGGCACAGACAGC
TGATCCTCTTTGGAATGCTTCTCAGCTGGAGATGGTTTGCCATGGGAAGATGCATGGTTTCATGCGTATGTATTGGGCGAAAAAGATTCTTGAGTGGACA
AGAGGGCCTGAAGAAGCCCTTGCGATATCCATATATCTAAATGACAAGTATGAGATAGATGGGAGGGATCCAGGTGGATATGTTGGTTGCATGTGGTCAA
TATGTGGCATCCACGATCAGGGTTGGAAAGAGCGACCGATTTTTGGGAAAATACGTTATATGAACTATGCAGGCTGCAAGCGGAAATTTAATGTTGATGG
ATACATCACTTATGTCAAGAGAATTGTGGGCGACATTAAGAAGAGAAAAGCGGAAAATGAGCTCCACAAAACAATGAAGGAGCTCCCCAGTTAA
AA sequence
>Potri.001G116800.2 pacid=42791058 polypeptide=Potri.001G116800.2.p locus=Potri.001G116800 ID=Potri.001G116800.2.v4.1 annot-version=v4.1
MASLSSPPTQNTIVQPGRIRVIKEGSRGQVGGGPVVYWMFRDQRLQDNWALIHAVDQANRSNVPVAVAFNLFDQFLGAKARQLGFMLRGLCQLQSHIEET
LQIPFFLFLGEAEETIPAFLKDCGASLLVTDFSPLRQFRTCQDEICKRVSDSVTIHEVDAHNVVPIWVASEKLEYSARTLRGKINKLLPEYLIDFPMLQL
PKNKWVAATKQSIDWNDLIDNVLRKGAEVPEIKWCEPGEDAAMEVLMGSKDGFLTQRLKNYSTDRNNPLKPKGLSGLSPYLHFGQISAQRCALEARKVRN
LSPQSADAFLEELIVRRELADNFCFYQPNYDSIHGAWEWARKTLADHASDKREHIYSKEQLEKAQTADPLWNASQLEMVCHGKMHGFMRMYWAKKILEWT
RGPEEALAISIYLNDKYEIDGRDPGGYVGCMWSICGIHDQGWKERPIFGKIRYMNYAGCKRKFNVDGYITYVKRIVGDIKKRKAENELHKTMKELPS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G12370 UVR2, PHR1 UV RESISTANCE 2, photolyase 1 ... Potri.001G116800
[exp]
0 1 Pt-PHR1.2
AT1G24764 ATMAP70-2 microtubule-associated protein... Potri.006G039200
[exp]
4.35 0.8808
AT1G15670 Galactose oxidase/kelch repeat... Potri.001G178500
[exp]
6.63 0.8220
AT4G36520 Chaperone DnaJ-domain superfam... Potri.002G033800
[exp]
14.49 0.7975 AUL1.3
AT5G03730 AtCTR1, SIS1, C... SUGAR-INSENSITIVE 1, CONSTITUT... Potri.010G234700
[exp]
29.58 0.7695 CTR1.4
AT4G33640 unknown protein Potri.007G116400
[exp]
30.29 0.7965
AT5G05830 RING/FYVE/PHD zinc finger supe... Potri.011G068800
[exp]
32.37 0.8046
AT4G29340 PRF4 profilin 4 (.1) Potri.003G047700
[exp]
34.14 0.7950 Pt-PRO1.2
AT1G28110 SCPL45 serine carboxypeptidase-like 4... Potri.001G065900
[exp]
38.61 0.7852
AT4G39220 ATRER1A Rer1 family protein (.1) Potri.004G156800
[exp]
38.82 0.7213 RER1.3
AT1G07980 CCAAT NF-YC10 "nuclear factor Y, subunit C10... Potri.009G012300
[exp]
46.79 0.7744

Potri.001G116800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.