Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60800 364 / 6e-127 DHHC-type zinc finger family protein (.1) AT4G22750 288 / 6e-97 DHHC-type zinc finger family protein (.1.2) AT4G22753 273 / 2e-87 ATSMO1-3, ATSMO1, SMO1-3 sterol 4-alpha methyl oxidase 1-3 (.1.2) AT4G00840 234 / 5e-76 DHHC-type zinc finger family protein (.1) AT3G09320 101 / 6e-25 DHHC-type zinc finger family protein (.1) AT5G04270 99 / 2e-24 DHHC-type zinc finger family protein (.1) AT5G50020 76 / 4e-15 DHHC-type zinc finger family protein (.1.2) AT3G26935 75 / 6e-15 DHHC-type zinc finger family protein (.1) AT3G48760 70 / 4e-13 DHHC-type zinc finger family protein (.1) AT4G24630 69 / 5e-13 DHHC-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G115600 [exp] 458 / 9e-164 AT3G60800 346 / 2e-119 DHHC-type zinc finger family protein (.1) Potri.014G069200 [exp] 376 / 2e-131 AT3G60800 447 / 9e-160 DHHC-type zinc finger family protein (.1) Potri.002G147300 [exp] 369 / 8e-129 AT3G60800 441 / 3e-157 DHHC-type zinc finger family protein (.1) Potri.014G104000 [exp] 257 / 1e-84 AT4G00840 297 / 5e-101 DHHC-type zinc finger family protein (.1) Potri.006G087400 [exp] 101 / 5e-25 AT3G09320 409 / 3e-145 DHHC-type zinc finger family protein (.1) Potri.016G100200 [exp] 100 / 1e-24 AT3G09320 426 / 5e-152 DHHC-type zinc finger family protein (.1) Potri.010G226100 [exp] 95 / 1e-22 AT5G04270 296 / 3e-101 DHHC-type zinc finger family protein (.1) Potri.006G027500 [exp] 83 / 1e-17 AT5G05070 456 / 9e-160 DHHC-type zinc finger family protein (.1) Potri.003G160600 [exp] 83 / 2e-17 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024561 [exp] 369 / 1e-128 AT3G60800 411 / 2e-145 DHHC-type zinc finger family protein (.1) Lus10032199 [exp] 365 / 6e-127 AT3G60800 409 / 2e-144 DHHC-type zinc finger family protein (.1) Lus10002694 [exp] 237 / 3e-76 AT4G00840 353 / 4e-122 DHHC-type zinc finger family protein (.1) Lus10009291 [exp] 113 / 3e-30 AT3G60800 202 / 3e-65 DHHC-type zinc finger family protein (.1) Lus10024377 [exp] 100 / 2e-24 AT3G09320 426 / 9e-152 DHHC-type zinc finger family protein (.1) Lus10010852 [exp] 99 / 1e-23 AT3G09320 418 / 6e-149 DHHC-type zinc finger family protein (.1) Lus10038701 [exp] 98 / 1e-23 AT5G04270 298 / 2e-102 DHHC-type zinc finger family protein (.1) Lus10030211 [exp] 92 / 2e-22 AT4G00840 159 / 5e-49 DHHC-type zinc finger family protein (.1) Lus10028687 [exp] 84 / 7e-18 AT4G24630 563 / 0.0 DHHC-type zinc finger family protein (.1) Lus10028737 [exp] 82 / 3e-17 AT4G24630 582 / 0.0 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [poplar] [flax] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Potri.001G117100.1 pacid=42792358 polypeptide=Potri.001G117100.1.p locus=Potri.001G117100 ID=Potri.001G117100.1.v4.1 annot-version=v4.1 ATGGCATGGAACGTGTTCAAGTTTTGCACAGCACTGCGAGCTCTTGGTTCTATCATGATAGCATTGGTCCTTGGCATAATTGGGGTTACATATTATGTTA TTGTTGTAGCTAATTATGGTCCCGCTCTTTTTCATGGTGGCCTTGATTCTTTTGTCGCTCTCCTTGTCTTGGTTTTGTTCCATTCTTTGCTGGTGATGCT ATTGTGGAGCTACTTTACTACTGTTCTGACTGATCCTGGTGGTGTCCCACCAAATTGGAGGCCATCAATAGACGAGGAGAGTGGCGATGCAGATCCATTG GTCGGATTAGCACATGAAGGTACGGGTTTAGATTTAAATCAGTCAGCTATGCTTGGTGAGCCAGCTAATCCAAGAACACGAGCCTGTCGAAAATGCAATT GGTTTAAACCTCCTCGCTGCCATCACTGTTCTGTTTGCGGGAGGTGTATATTGAAAATGGACCATCATTGTGTATGGGTTGTGAATTGTGTCGGGGCATT GAATTACAAGTATTTTCTTCTTTTCTTGTTTTACACATTTCTTGTGACAACTCTTGTCACTTTATCATTATTGCCGCAGTTTTTAGCATTTTTTACTGTT GGTGAAAAAAATGGAACACCAGAGACCCTTGTAGCCACTTTTGTCACATTTGTCTTGAACTTATCATTTGCATTGAGTATTATGGGCTTCCTGATTATGC ACATATCATTGGTATTAGGCAATACCACCACCATTGAGGCATTTGAGAAGAAATCCAATCCTAAATGGCATTATGACCTTGGTCGAAGGAAAAACTTTGA ACAGGTGTTTGGGACGGATAAGAGATACTGGTTCATCCCTGCTTATTCAGAAGAGGATTTGGAATGCATGCCAGTGCTTCAAGGTTTTGAATATCCAACA AGACCAGACTTGGATGAGCTCCAGCAGTTCTAA
AA sequence Show only first row Show all	>Potri.001G117100.1 pacid=42792358 polypeptide=Potri.001G117100.1.p locus=Potri.001G117100 ID=Potri.001G117100.1.v4.1 annot-version=v4.1 MAWNVFKFCTALRALGSIMIALVLGIIGVTYYVIVVANYGPALFHGGLDSFVALLVLVLFHSLLVMLLWSYFTTVLTDPGGVPPNWRPSIDEESGDADPL VGLAHEGTGLDLNQSAMLGEPANPRTRACRKCNWFKPPRCHHCSVCGRCILKMDHHCVWVVNCVGALNYKYFLLFLFYTFLVTTLVTLSLLPQFLAFFTV GEKNGTPETLVATFVTFVLNLSFALSIMGFLIMHISLVLGNTTTIEAFEKKSNPKWHYDLGRRKNFEQVFGTDKRYWFIPAYSEEDLECMPVLQGFEYPT RPDLDELQQF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G60800			DHHC-type zinc finger family p...		Potri.001G117100 [exp]	0	1
AT4G37020			unknown protein		Potri.007G043200 [exp]	1.41	0.9313
AT1G64385			unknown protein		Potri.001G092300 [exp]	2.00	0.9090
AT2G13290			beta-1,4-N-acetylglucosaminylt...		Potri.018G127900 [exp]	2.00	0.9210
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.017G078500 [exp]	3.87	0.9196	HMGB906,ATHMG.1
AT1G77360			Tetratricopeptide repeat (TPR)...		Potri.003G045800 [exp]	5.00	0.9069
AT5G10810		ATER	ARABIDOPSIS THALIANA ENHANCER ...		Potri.018G017300 [exp]	5.65	0.8961
AT5G18070		DRT101	DNA-DAMAGE-REPAIR/TOLERATION 1...		Potri.001G146900 [exp]	6.24	0.8531	Pt-DRT101.2
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Potri.004G130400 [exp]	6.70	0.8912
AT5G64460			Phosphoglycerate mutase family...		Potri.002G108500 [exp]	7.34	0.8677
AT2G32170			S-adenosyl-L-methionine-depend...		Potri.016G021400 [exp]	7.74	0.9025

Compare expression of checked genes

Potri.001G117100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.