Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02570 1226 / 0 AXR6, ATCUL1 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) AT1G02980 967 / 0 ATCUL2, CUL2 cullin 2 (.1) AT1G43140 930 / 0 Cullin family protein (.1) AT1G59790 392 / 9e-131 Cullin family protein (.1) AT1G26830 403 / 3e-130 CUL3A, ATCUL3A, ATCUL3 cullin 3A, cullin 3 (.1) AT1G69670 398 / 3e-128 CUL3B, ATCUL3B ARABIDOPSIS THALIANA CULLIN 3B, cullin 3B (.1) AT5G46210 365 / 8e-115 CUL4, ATCUL4 cullin4 (.1) AT1G59800 273 / 2e-86 Cullin family protein (.1) AT2G04660 53 / 9e-07 APC2 anaphase-promoting complex/cyclosome 2 (.1) AT4G12100 44 / 0.0004 Cullin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G115500 [exp] 1386 / 0 AT4G02570 1209 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.008G217300 [exp] 1215 / 0 AT4G02570 1272 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.010G023800 [exp] 1209 / 0 AT4G02570 1265 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.008G148300 [exp] 413 / 5e-134 AT1G26830 1342 / 0.0 cullin 3A, cullin 3 (.1) Potri.010G093200 [exp] 404 / 2e-130 AT1G26830 1345 / 0.0 cullin 3A, cullin 3 (.1) Potri.011G084400 [exp] 382 / 2e-121 AT5G46210 1250 / 0.0 cullin4 (.1) Potri.004G132900 [exp] 367 / 3e-115 AT5G46210 1211 / 0.0 cullin4 (.1) Potri.008G217700 [exp] 232 / 2e-70 AT4G02570 225 / 3e-68 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.008G224075 [exp] 221 / 2e-68 AT4G02570 218 / 4e-68 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028917 [exp] 1216 / 0 AT4G02570 1290 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10024562 [exp] 1210 / 0 AT4G02570 1271 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10032200 [exp] 1206 / 0 AT4G02570 1269 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10004334 [exp] 1202 / 0 AT4G02570 1279 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10036739 [exp] 415 / 1e-134 AT1G26830 1335 / 0.0 cullin 3A, cullin 3 (.1) Lus10037188 [exp] 410 / 9e-133 AT1G26830 1328 / 0.0 cullin 3A, cullin 3 (.1) Lus10012835 [exp] 407 / 1e-131 AT1G26830 1320 / 0.0 cullin 3A, cullin 3 (.1) Lus10030485 [exp] 404 / 3e-130 AT1G26830 1317 / 0.0 cullin 3A, cullin 3 (.1) Lus10023306 [exp] 328 / 2e-102 AT5G46210 1077 / 0.0 cullin4 (.1) Lus10038504 [exp] 258 / 1e-76 AT5G46210 913 / 0.0 cullin4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00888 [poplar] [flax] Cullin Cullin family CL0123 [poplar] [flax] HTH PF10557 [poplar] [flax] Cullin_Nedd8 Cullin protein neddylation domain
Representative CDS sequence Show only first row Show all	>Potri.001G117200.1 pacid=42792137 polypeptide=Potri.001G117200.1.p locus=Potri.001G117200 ID=Potri.001G117200.1.v4.1 annot-version=v4.1 ATGGGTGAGCGCAAGACTATTGAACTTGAGCAAGGATGGGAATATATGCGGAAAGGGATCACAAAGCTGAAGGGGATTCTGGATGGATCACTGGAGCAAT TCAACTCAGAAGAATATATGATGCTTTACACAACTATCTACAATATGTGTACTCAGAAGCCACCCAATGACTATTCTCAGCAGCTTTATGACAAGTACAG GGAGGCGTTTCAAGTATATATAAACTCCACGGTATTACCATCGATAAGGGAGAAGCACGATGAGTTTATGCTGAGGGAGCTTGTGAAAAGATGGGCTAAC CATAAAATTATGGTTAGGTGGTTGTCACGCTTCTTTCATTATCTTGACCGTTACTTCATTGCTCGGAGGTCACTTCCTCCACTTAATGAAGTTGGACTGA CTTGCTTCCGTGATCTGGTTTATCAGGAAGTGAATAGTAAAGCAAAGGATGCTGTGCTTGATGTGATTAGTAAAGAACGCGACGGAGAACAGATTGACAG AGCACTGCTGAAGAATGTTTTAGATATATTTGTTGAGATTGGAATGTCACAAATGGATCATTATGAAGATGATTTTGAAGCACATATGCTTCAAGGTACT AGTGCTTACTATTCTGTTAAAGCGGCAAACTGGATTCGAGAGGATTCCTGTCCAGATTACATGATAAAGGCTGAGGAATGCTTGAAGAGAGAGAGAGAGA GAGTTTCTCATTACTTGCACTCAAGCAGTGAGACAAAGTTAGTGGAGAAAGTGCAACACGAGTTGTTGGTGGTCCATGCGAACCAACTGCTAGAAAAGGA ACATTCTGGAGTTCACTCATTGCTTAGAGATGACAAGTTGGATGATCTATCCAGGATGTTCAGGCTTTACCATAAGGTTCCCCATGGCTTGGAACCTGTT TCTAATGTATTCAAGCAGCATATTACTGCTGAAGGAACAGCCCTGGTCCAGCAGGCAGAAGATGCTGCGAGTAGCCAGGCTGCAAATGGTGGTGTTCAGG AACAAGTTCTCATCCGAAAGATAATTGAGCTGCATGATAAATACATGACTTATGTGACTGATTGCTTTCAAAACCACACCTTGTTTCACAAGGCCATGAA AGAGGCTTTTGAGATTTTTTGCAATAGAACAGTTGCTGGGAGCTCTAGTGCTGAACAACTGGCCACCTTTTGTGATACTATCCTCCGAAAGGGGGGAAGT GAGAAACTAAGTGATGAAGCCATTGAAGAAACACTGGAGAAGGTGGTTAAGCTGCTTGCATATATTAGTGACAAGGACCTTTTTGCCGAATTTTATCGGA AAAAGCTTGCCCGTCGTCTTCTTTTTGATCGAAGTGCTAATGATGAACATGAAAGGAGTATTCTTTCAAAATTGAAGCAGCAATGTGGTGGTCAATTCAC CTCAAAGATGGAAGGAATGGTCACAGATTTGCAACTGGCAAAGGAACACCAGTCCAGCTTTGACGAGTATCTTGGCAATAACCCAACCACACGTACTGGG ATTGATTTGCAAGTTAGTGTTCTCACAACTGGGTACTGGCCAAGTTATAAATCCTCCGATATCAACCTGCCTGCAGAAATGGCTAGGGGAGTGGAAGTTT TCAAGGAGTTCTATGACAACAAGAGTAAGCACAGAAAACTTACATGGATTTACTCGCTGGGATCTTGCCACATTAATGCCAGGTTTGACCAAAAACCTAT TGAGCTGGTTGTGACAACCTACCAGGCTTGTCTCCTGATGCTTTTTAATACTTCAGACAAGCTTGGTTACCCTGAGATTATGACTCAGTCAAACTTGAGC GACGATGATTTGCCCCGATTGCTTCATTCCCTGTCATGTGGAAAGTATAAGATCCTTAGCAAGGAACCAAACACAAAGACTGTTACCCAAAATGATTCCT TTGAGTTCAATCGCAAGTTCAATGACAGAATGAGGAGGATCAAGGTTCCTCTTCCACTTGTTGATGAAAGAAAGAAGGTTGTTGAAGATGTTCACAAAGA CAGACGGTATGCAATCGATGCTGCAATTGTGCGCATCATGAAGAGCCGGAAAGTTTTGGGTCATCAACAGCTAGTCATGGAGTGTGTTGAGCAATTGACT CGCATGTTCAAGCCTGACATTAAAGCTATCAAGAAGCGAATAGAAGATCTGATATCCCGAGACTATTTAGAAAGAGACAAGGAAAACCCAAACATGTTTA GGTACCTGGCTTGA
AA sequence Show only first row Show all	>Potri.001G117200.1 pacid=42792137 polypeptide=Potri.001G117200.1.p locus=Potri.001G117200 ID=Potri.001G117200.1.v4.1 annot-version=v4.1 MGERKTIELEQGWEYMRKGITKLKGILDGSLEQFNSEEYMMLYTTIYNMCTQKPPNDYSQQLYDKYREAFQVYINSTVLPSIREKHDEFMLRELVKRWAN HKIMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYQEVNSKAKDAVLDVISKERDGEQIDRALLKNVLDIFVEIGMSQMDHYEDDFEAHMLQGT SAYYSVKAANWIREDSCPDYMIKAEECLKRERERVSHYLHSSSETKLVEKVQHELLVVHANQLLEKEHSGVHSLLRDDKLDDLSRMFRLYHKVPHGLEPV SNVFKQHITAEGTALVQQAEDAASSQAANGGVQEQVLIRKIIELHDKYMTYVTDCFQNHTLFHKAMKEAFEIFCNRTVAGSSSAEQLATFCDTILRKGGS EKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDEHERSILSKLKQQCGGQFTSKMEGMVTDLQLAKEHQSSFDEYLGNNPTTRTG IDLQVSVLTTGYWPSYKSSDINLPAEMARGVEVFKEFYDNKSKHRKLTWIYSLGSCHINARFDQKPIELVVTTYQACLLMLFNTSDKLGYPEIMTQSNLS DDDLPRLLHSLSCGKYKILSKEPNTKTVTQNDSFEFNRKFNDRMRRIKVPLPLVDERKKVVEDVHKDRRYAIDAAIVRIMKSRKVLGHQQLVMECVEQLT RMFKPDIKAIKKRIEDLISRDYLERDKENPNMFRYLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.001G117200 [exp]	0	1
AT2G26310			Chalcone-flavanone isomerase f...		Potri.018G048500 [exp]	1.41	0.7516
AT1G76510	ARID		ARID/BRIGHT DNA-binding domain...		Potri.005G257300 [exp]	3.00	0.7700
AT1G16330		CYCB3;1	cyclin b3;1 (.1)		Potri.010G173200 [exp]	12.00	0.6887
AT2G38695			unknown protein		Potri.003G190101 [exp]	12.32	0.6920
AT5G01660			unknown protein		Potri.016G127600 [exp]	13.78	0.6880
AT1G04120		ATABCC5, ABCC5,...	MULTIDRUG RESISTANCE PROTEIN 5...		Potri.014G193400 [exp]	14.69	0.7184	Pt-MRP5.2
AT3G06540		AthREP	Rab escort protein (.1)		Potri.005G028900 [exp]	14.86	0.6729
AT4G31810			ATP-dependent caseinolytic (Cl...		Potri.006G264200 [exp]	17.32	0.7093
AT2G22400			S-adenosyl-L-methionine-depend...		Potri.016G098850 [exp]	17.66	0.6809
AT2G14050		MCM9	minichromosome maintenance 9 (...		Potri.019G014403 [exp]	18.57	0.6498

Compare expression of checked genes

Potri.001G117200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.