Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62850 306 / 3e-106 Class I peptide chain release factor (.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G115300 [exp] 401 / 4e-144 AT1G62850 258 / 2e-87 Class I peptide chain release factor (.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024564 [exp] 302 / 3e-104 AT1G62850 283 / 1e-96 Class I peptide chain release factor (.2.3) Lus10032202 [exp] 249 / 1e-84 AT1G62850 230 / 3e-77 Class I peptide chain release factor (.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0337 [poplar] [flax] RF PF00472 [poplar] [flax] RF-1 RF-1 domain
Representative CDS sequence Show only first row Show all	>Potri.001G117500.1 pacid=42790351 polypeptide=Potri.001G117500.1.p locus=Potri.001G117500 ID=Potri.001G117500.1.v4.1 annot-version=v4.1 ATGGCGGTTATCAGAACCACAACCAACATGATTCTCAAGCAAGTCTTCCTCAATCATCGACTAATACCACCATTGTCTGTGACTAGAACATTAAGTAATT TACACTGGGCGAGCCTTGAAGTACCAAATCGCCAAATCAGCTCCTGCCGGATTAAATGTGCGGCTTCCGATGATAAGAAGGTATCCGCTCGGTTGTCTCA GGTTCATCAGTTACTGCAAGAAGCGGAGGAGCGAGCCAGCGCCGTTGGAAACGAGCCGACTCCAAAAATCACACGCGGGCATGTTACTGTGAGTTTTGCA AGAAGCGGTGGGCCTGGTGGTCAGAATGTAAACAAAGTTAACACCAAGGTGGACATGCGCTTCAATGTCAAAAAAGCATATTGGCTAAGTGACAGGATCA GAGAGAGGATCATGCAAATGGAAAAGAATCGCATTAACAAGGATGGTGAGATTGTGATATCTTCAACAAAGACTAGAACACAGACGGGTAACATTGACGA TGCTTTAGAAAAACTACAGGCAGTCATTGATGCGGCTTCTTATGTTCCACCACCTCCTTCGGAAGAGCAAAAGAAGAAGATTGCCAAGCTGGCTTCTATC GGGGAGCAGAAGCGACTGAGAAGTAAGAAAGTCCTTTCAGACAAGAAGGCTTTTAGAAGAAGTCGGGACAGTTGGGACTAG
AA sequence Show only first row Show all	>Potri.001G117500.1 pacid=42790351 polypeptide=Potri.001G117500.1.p locus=Potri.001G117500 ID=Potri.001G117500.1.v4.1 annot-version=v4.1 MAVIRTTTNMILKQVFLNHRLIPPLSVTRTLSNLHWASLEVPNRQISSCRIKCAASDDKKVSARLSQVHQLLQEAEERASAVGNEPTPKITRGHVTVSFA RSGGPGGQNVNKVNTKVDMRFNVKKAYWLSDRIRERIMQMEKNRINKDGEIVISSTKTRTQTGNIDDALEKLQAVIDAASYVPPPPSEEQKKKIAKLASI GEQKRLRSKKVLSDKKAFRRSRDSWD

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G62850			Class I peptide chain release ...		Potri.001G117500 [exp]	0	1
AT4G24770		CP31, ATRBP33, ...	ARABIDOPSIS THALIANA RNA BINDI...		Potri.001G340800 [exp]	1.41	0.9187
AT1G68660			Ribosomal protein L12/ ATP-dep...		Potri.010G128500 [exp]	14.69	0.9033
AT1G07830			ribosomal protein L29 family p...		Potri.002G185800 [exp]	18.22	0.8496
AT2G32650			RmlC-like cupins superfamily p...		Potri.014G156900 [exp]	20.37	0.9032
AT3G04890			Uncharacterized conserved prot...		Potri.013G036500 [exp]	23.74	0.9030
AT1G31340		NEDD8, ATRUB1, ...	ARABIDOPSIS THALIANA RELATED T...		Potri.007G067500 [exp]	26.53	0.8564	Pt-UBQ7.1
AT1G23860		SRZ21, SRZ-21, ...	RS-containing zinc finger prot...		Potri.019G050600 [exp]	26.98	0.8615
AT5G15390			tRNA/rRNA methyltransferase (S...		Potri.004G122300 [exp]	44.59	0.8954
AT1G76405			unknown protein		Potri.005G255100 [exp]	48.90	0.8728
AT5G57060			unknown protein		Potri.003G044400 [exp]	51.61	0.8170

Compare expression of checked genes

Potri.001G117500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.