Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45360 227 / 1e-75 Protein of unknown function (DUF1442) (.1) AT3G60780 227 / 1e-75 Protein of unknown function (DUF1442) (.1) AT1G62840 209 / 2e-68 Protein of unknown function (DUF1442) (.1) AT1G12320 171 / 1e-53 Protein of unknown function (DUF1442) (.1) AT5G62280 66 / 4e-13 Protein of unknown function (DUF1442) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G115200 [exp] 370 / 4e-132 AT2G45360 238 / 9e-80 Protein of unknown function (DUF1442) (.1) Potri.002G147100 [exp] 261 / 4e-89 AT3G60780 269 / 4e-92 Protein of unknown function (DUF1442) (.1) Potri.014G068900 [exp] 239 / 3e-80 AT2G45360 251 / 2e-85 Protein of unknown function (DUF1442) (.1) Potri.014G098800 [exp] 97 / 1e-24 AT2G45360 99 / 5e-25 Protein of unknown function (DUF1442) (.1) Potri.012G128900 [exp] 89 / 9e-22 AT5G62280 204 / 3e-66 Protein of unknown function (DUF1442) (.1) Potri.015G130500 [exp] 82 / 6e-19 AT5G62280 199 / 2e-64 Protein of unknown function (DUF1442) (.1) Potri.014G069000 [exp] 81 / 8e-19 AT5G62280 147 / 6e-44 Protein of unknown function (DUF1442) (.1) Potri.002G147200 [exp] 54 / 3e-09 AT5G62280 77 / 9e-18 Protein of unknown function (DUF1442) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024565 [exp] 263 / 2e-89 AT2G45360 223 / 1e-73 Protein of unknown function (DUF1442) (.1) Lus10032203 [exp] 161 / 2e-50 AT2G45360 125 / 1e-36 Protein of unknown function (DUF1442) (.1) Lus10031701 [exp] 77 / 3e-17 AT5G62280 179 / 2e-56 Protein of unknown function (DUF1442) (.1) Lus10031122 [exp] 73 / 2e-15 AT5G62280 166 / 3e-51 Protein of unknown function (DUF1442) (.1) Lus10027191 [exp] 55 / 6e-09 AT5G62280 150 / 5e-45 Protein of unknown function (DUF1442) (.1) Lus10041061 [exp] 55 / 7e-09 AT5G62280 55 / 6e-09 Protein of unknown function (DUF1442) (.1) Lus10006163 [exp] 50 / 2e-07 AT5G62280 59 / 2e-10 Protein of unknown function (DUF1442) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF07279 [poplar] [flax] DUF1442 Protein of unknown function (DUF1442)
Representative CDS sequence Show only first row Show all	>Potri.001G117600.1 pacid=42793252 polypeptide=Potri.001G117600.1.p locus=Potri.001G117600 ID=Potri.001G117600.1.v4.1 annot-version=v4.1 ATGAAGCTAGTCTGGTCACCTGAAACAGCCTCCAAGGCCTACATCGATACTGTCAAATCTTGTGAGGTTCATCAAGAATCCAGTGTCGCTGAGCTTATTT CAGCCATGGCTGCAGGATGGAACGCCAAACTTATACTAGAAACATGGTCACAAGGTGGAATTCTTGCCACGAGTATTGGTCTAGCCATAGCTAGCCGCCG CACGGATGGAAGACACGTTTGTATTGTGCCTGATGAACTATCAAGATCGCAATATGAGGAAGCCGTGGGAGAGGCTGGGATATCCCCAGAAATTATTATT GGGGAGGCAGAAGAGGTTATGGAGGGGCTGGTAGGCATAGATTTTATGGTGGTGGATTCACGGCAAAGGGATTTTGCTGGAGTATTGAGGGTGGCAAAGC TGAGCAGCCGGGGTGCAGTTTTGGTGTGCAAGAATGCTACTTCAAGGAACGAGTCAAGTTTTAGATGGAGAAGTGTTGTTGATGATGGATCGCGACGACT TGTGCGTTCTGTATTTCTTCCTGTAGGGAAGGGTCTGGATATTGCACACGTAGCCACCAGTGGGGGAAGTTCTAGTAATTCAGGCAAGGGTGAAAGCCGA TGGATCAAGCATGTCGATAGACAATCAGGGGAGGAGTATGTCATCCGAAAGTGA
AA sequence Show only first row Show all	>Potri.001G117600.1 pacid=42793252 polypeptide=Potri.001G117600.1.p locus=Potri.001G117600 ID=Potri.001G117600.1.v4.1 annot-version=v4.1 MKLVWSPETASKAYIDTVKSCEVHQESSVAELISAMAAGWNAKLILETWSQGGILATSIGLAIASRRTDGRHVCIVPDELSRSQYEEAVGEAGISPEIII GEAEEVMEGLVGIDFMVVDSRQRDFAGVLRVAKLSSRGAVLVCKNATSRNESSFRWRSVVDDGSRRLVRSVFLPVGKGLDIAHVATSGGSSSNSGKGESR WIKHVDRQSGEEYVIRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45360			Protein of unknown function (D...		Potri.001G117600 [exp]	0	1
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.018G149300 [exp]	4.35	0.8904	CYP716.1
AT2G27660			Cysteine/Histidine-rich C1 dom...		Potri.001G229500 [exp]	8.83	0.8740
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.007G044000 [exp]	17.74	0.8496
AT4G23050			PAS domain-containing protein ...		Potri.001G108900 [exp]	22.51	0.8647
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Potri.004G208500 [exp]	23.49	0.8644	HMGR3.4
AT4G39720			VQ motif-containing protein (....		Potri.006G006300 [exp]	28.63	0.8593
					Potri.017G101650 [exp]	32.17	0.8544
AT2G26530		AR781	Protein of unknown function (D...		Potri.002G128500 [exp]	34.02	0.8590
AT1G30760			FAD-binding Berberine family p...		Potri.011G159600 [exp]	36.08	0.8588
					Potri.003G184601 [exp]	37.73	0.8561

Compare expression of checked genes

Potri.001G117600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.