Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12130 451 / 2e-158 Glycine cleavage T-protein family (.1) AT1G60990 45 / 6e-05 Glycine cleavage T-protein family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024566 [exp] 511 / 0 AT4G12130 521 / 0.0 Glycine cleavage T-protein family (.1) Lus10032204 [exp] 502 / 2e-178 AT4G12130 510 / 0.0 Glycine cleavage T-protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08669 [poplar] [flax] GCV_T_C Glycine cleavage T-protein C-terminal barrel domain
Representative CDS sequence Show only first row Show all	>Potri.001G117700.1 pacid=42791346 polypeptide=Potri.001G117700.1.p locus=Potri.001G117700 ID=Potri.001G117700.1.v4.1 annot-version=v4.1 ATGCATCTTTTCAAAACAATCTTCCCCAAAAACTACCACACCTTAAACAACACAAGCACAGGTCCTCTTGTCTCCCTCTTAAAATCCCGGTCCGTAATTC GGTTCAGCGGTCCAGACACAGTCAAATTCTTACAAGGTTTATTGACAAACGATGTTAAAAAATTCAGTGAACTCCCAAGCGGGACAACATCGTACGTGCC CACTCCAAATTTGCCTTCTGTCTATGTTCCTCCTATGTACGCTGCGTTTTTGACTCCACAAGGGAGGTTCTTGTATGATTTGTTTTTGTATAGAAAGCCT CTGGGTGAGGAGAAGCTTGATGGGTCCGGGTCGGGTCCTGGGTCGGATTCGGGTGGGGATTTGGAGTTGTTTGCTGATGTGGATAGCTCGGTTCTTGATG AGTTATTGCTTACTTTTAAAAGATACCGGTTGAGGTCAAAGGTTGAAATTGATAACGTGGCAGAAGACTTCTCTTGCTGGCAACGGTTTGGTGGGAACCT TGCTGAAAAATCAAAAGGTGAAGAAGAGCCAGAGGCAGCTAGTGTTGGCTCGGGCCCTGGTGTTGATCACTCTGCCATGTCATCTTCACATGGGAATGAT GTTGGATGGCAATGGTTTAAGGACCCCAGAGTAGATTGTCTTGGTTTGAGGGGGGTCTTTCCATCTAAAGAGACTCCACCTTTGGTAGAATCTGACAAAG AAACAAATGAACTGAATTACCTATTATGGAGAATTGAGAATGGAATTGCAGAAGGCTCAACTGAGATCCCCATAGGTGAAGCGATTCCTCTTGAATACAA TCTGGAGGGTTTAAATGCAATAAGCTTTGACAAAGGATGCTATGTGGGCCAAGAATTTATAGCTCGAACACACCACAGAGGGGTTATTCGCAAACGATTG CTTTCTTTAGCGTTTCTTGATGATAGTGGAAAAGAAGTGGAGCAGAAAGTTGGTCCAGGTTCAGAAGTCATCAACACAGCATCTGGCAAGAAAATTGGGT ATGTGACGACTGCACTTGGCTGTAGAGGGCTGGGTGTTTTGCGGTTAAAAGAAGCCTTTAAAGGGTCAGGTTCATTGACCATACAAGGGCAGGAGGACAT AAAGGTTGAGGCCATTAGACCAAAATGGTGGCCTGCCGAATGGTTTTCAGAGCATCAACAGCATAGTGCAGTGGCTTAG
AA sequence Show only first row Show all	>Potri.001G117700.1 pacid=42791346 polypeptide=Potri.001G117700.1.p locus=Potri.001G117700 ID=Potri.001G117700.1.v4.1 annot-version=v4.1 MHLFKTIFPKNYHTLNNTSTGPLVSLLKSRSVIRFSGPDTVKFLQGLLTNDVKKFSELPSGTTSYVPTPNLPSVYVPPMYAAFLTPQGRFLYDLFLYRKP LGEEKLDGSGSGPGSDSGGDLELFADVDSSVLDELLLTFKRYRLRSKVEIDNVAEDFSCWQRFGGNLAEKSKGEEEPEAASVGSGPGVDHSAMSSSHGND VGWQWFKDPRVDCLGLRGVFPSKETPPLVESDKETNELNYLLWRIENGIAEGSTEIPIGEAIPLEYNLEGLNAISFDKGCYVGQEFIARTHHRGVIRKRL LSLAFLDDSGKEVEQKVGPGSEVINTASGKKIGYVTTALGCRGLGVLRLKEAFKGSGSLTIQGQEDIKVEAIRPKWWPAEWFSEHQQHSAVA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12130			Glycine cleavage T-protein fam...		Potri.001G117700 [exp]	0	1
AT2G43630			unknown protein		Potri.006G123800 [exp]	9.16	0.8702
AT4G02920			unknown protein		Potri.014G138200 [exp]	9.43	0.9068
AT4G38090			Ribosomal protein S5 domain 2-...		Potri.007G010400 [exp]	16.37	0.8540
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Potri.018G090800 [exp]	69.36	0.8682
AT5G58070		ATTIL	temperature-induced lipocalin ...		Potri.018G110800 [exp]	73.02	0.8618
AT3G03890			FMN binding (.1.2)		Potri.019G035200 [exp]	79.48	0.8635
AT3G20270			lipid-binding serum glycoprote...		Potri.008G004500 [exp]	104.88	0.8365
AT4G18370		DEGP5, DEG5, HH...	PROTEASE HHOA PRECUSOR, DEGP p...		Potri.004G065600 [exp]	117.37	0.8559
AT2G15695			Protein of unknown function DU...		Potri.004G142000 [exp]	122.80	0.8279
AT5G58760		DDB2	damaged DNA binding 2 (.1)		Potri.001G251000 [exp]	146.39	0.8331

Compare expression of checked genes

Potri.001G117700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.