Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22730 848 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G51560 742 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G45340 717 / 0 Leucine-rich repeat protein kinase family protein (.1) AT4G22130 243 / 1e-70 SRF8 STRUBBELIG-receptor family 8 (.1.2) AT3G25560 238 / 2e-69 NIK2 NSP-interacting kinase 2 (.1.2.3) AT1G17230 242 / 3e-68 Leucine-rich receptor-like protein kinase family protein (.1) AT4G20140 242 / 6e-68 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT3G24240 235 / 1e-65 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G01890 233 / 2e-65 Leucine-rich receptor-like protein kinase family protein (.1) AT5G48940 233 / 8e-65 Leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G115100 [exp] 1110 / 0 AT4G22730 788 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G130100 [exp] 822 / 0 AT5G51560 940 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G128700 [exp] 797 / 0 AT5G51560 906 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.014G068700 [exp] 790 / 0 AT2G45340 831 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.002G147000 [exp] 781 / 0 AT2G45340 808 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G108000 [exp] 248 / 3e-73 AT5G16000 995 / 0.0 NSP-interacting kinase 1 (.1) Potri.013G091000 [exp] 243 / 6e-69 AT3G56370 1227 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.002G258400 [exp] 244 / 1e-68 AT1G35710 681 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G058600 [exp] 241 / 2e-68 AT3G56370 1174 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004333 [exp] 855 / 0 AT4G22730 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10028916 [exp] 829 / 0 AT4G22730 749 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031703 [exp] 737 / 0 AT5G51560 851 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031123 [exp] 734 / 0 AT5G51560 855 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004032 [exp] 634 / 0 AT2G45340 747 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030279 [exp] 548 / 0 AT2G45340 648 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030898 [exp] 240 / 4e-70 AT1G60800 931 / 0.0 NSP-interacting kinase 3 (.1) Lus10030591 [exp] 239 / 2e-69 AT1G60800 929 / 0.0 NSP-interacting kinase 3 (.1) Lus10003612 [exp] 239 / 5e-67 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10022679 [exp] 231 / 9e-66 AT3G51740 926 / 0.0 inflorescence meristem receptor-like kinase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G117800.1 pacid=42790941 polypeptide=Potri.001G117800.1.p locus=Potri.001G117800 ID=Potri.001G117800.1.v4.1 annot-version=v4.1 ATGGGTTCTTTATGTTATTTCTCTTCTCTCATTCTATTTCTTTCACTGTTAACTCCACAAAAAATTTCTGGAAACAATACGGAGCTTGAAGCTCTGGTGA AGCTAAAGTTTGCTTTAGACCCAAACAATAAATATTTACAGTCATGGACTAGTGATGGCGACCCCTGCAGTGGCTTATTTGAGGGTGTGGCTTGCAACGA GCATGGCCAAGTGGCTAACATTTCATTGCAGGGAAAGGGACTATCTGGTACAATATCTCCTGCAGTGGCAGAACTGAAGAGCTTGTCCGGTCTGTACTTG CATTATAATTCGTTGTCTGGAGAGATACCAAAGGAGATTGTTAATTTGGTTGGGCTGTCTGATCTTTATCTCAACGTGAATAATCTTTCCGGGAGTATTC CTCCTGAGATTGGCAGCATGGCTTCTCTACAAGTTTTAGAGCTATGTTGTAACCAGCTCGCAGGGTACATACCTACAGAAATGGGGTCCTTGAAGAGGCT AAGCGTTCTAGCATTGCAGTATAACAGACTAGTTGGTCAAATTCCTGCCAGCTTAGGGACCTTGGGAATGTTGAAAAGGCTTGATATGAGTTTTAATTAC TTGTCTGGGACAATTCCTCAAGGAATAGCTAACATTCCACGTCTGGAAGTGCTGGATGTCCGGAACAATTCTCTTTCTGGAACTGTCCCTTTTGCTTTGA AGAGATTAAATGGGGGATTTCAGTTTGAGAACAACCAAGGTTTATGTGGAACTGGATTTCATCCATTGAGAGCTTGCAGTGCTTTTGATAATATGAACAT CAACCAAGTTGGCTCGTTGGGACCGATCGCTAATAATTCTGCTAAAAAAGTTACCCCCCAGTCTGCAATTCTGCAGGCACATTGCAACCAAACCCATTGT TCAAATTCATCAAAGCTTCCACAGGCTGCCATTGTTGCAGGGGTTATTATAGTCACTATCACATTGATGGGTGCTGGATTTCTGATCATTTTCTGCTATC GCCGGAAGAAACAAAAGATTGGGAATACATCTGATTCTTCTGATGGTCGGCTAAGCACTGACCAGGCTAAGGAGTTCCACAGGGCTGGTGCCTCTCCACT TGCAAGTCTGGAGTATTCTAACGGATGGGACCCATTAGGTGACAGCCGAAATGGCATTGAATTCTCTGTGGAGCATCTAAATAACTTTAGATTCAATCTG GAAGAGATCGAGTCTGCTACCCAGTGCTTTTCTGAGGTGAATGTATTGGGAAAGAGCAGCTTCTCAACTGTCTACAAAGGAGTTCTCAGAGATGGTTCTA TTGTAGCTATTAAGAGCATTAACGTAACCAGCTGTAAACCTGAAGAAGCCGAGTTTGTAAAGGGTTTGAACTTGCTAACATCTTTGAGACATGACAACCT CACTCGGCTGCGAGGCTTTTGTTGCTCCAGGGGCAGGGGTGAATGTTTTCTTATCTATGATTTTGCTCCCAAGGGAGATCTGTCAAGATACCTTGATTTA GAAGATGGAAGCAATCAAGTTCTTGACTGGTCTACAAGAGTTTCCATTATCAATGGCATCGCAAAAGGTATTAGATATTTGCACAGCATTGAAGAGAAGA AACCTGCCATAATTCATCGAAGAATATCCGTTGAGAAGGTCCTCCTTGACCAGCAGGTAAATCCATTAATCGCAGACTCCGGCCTTGCTAAGCTTCTAGC AGATGACATTGTCTTCTCAACTATCAAAATCAGTGCTGCCATGGGATACCTGGCTCCAGAATATGTAACCACAGGACTTTTTACCGAGAAGAGTGATATA TATTCGTTTGGAGTGATCATCCTCCAAATCCTATCCGGTAAACAGTTGCTGTCCAATTCAATGCGATTGGCAGCTGCATGTTGCAGATACAATGACTTCA TTGACACAAGCCTCCGAGGAAACTTCTCTGAGTCTGAGGCAGCTAAGCTGGCAAAAATTGCACTAGCTTGCACTGACGATCTCCCTGACCAAAGACCAAC CATGAAGGAAGTGATTCAAGAGCTGAACCTAAGCAATGCTGGTTCTTAA
AA sequence Show only first row Show all	>Potri.001G117800.1 pacid=42790941 polypeptide=Potri.001G117800.1.p locus=Potri.001G117800 ID=Potri.001G117800.1.v4.1 annot-version=v4.1 MGSLCYFSSLILFLSLLTPQKISGNNTELEALVKLKFALDPNNKYLQSWTSDGDPCSGLFEGVACNEHGQVANISLQGKGLSGTISPAVAELKSLSGLYL HYNSLSGEIPKEIVNLVGLSDLYLNVNNLSGSIPPEIGSMASLQVLELCCNQLAGYIPTEMGSLKRLSVLALQYNRLVGQIPASLGTLGMLKRLDMSFNY LSGTIPQGIANIPRLEVLDVRNNSLSGTVPFALKRLNGGFQFENNQGLCGTGFHPLRACSAFDNMNINQVGSLGPIANNSAKKVTPQSAILQAHCNQTHC SNSSKLPQAAIVAGVIIVTITLMGAGFLIIFCYRRKKQKIGNTSDSSDGRLSTDQAKEFHRAGASPLASLEYSNGWDPLGDSRNGIEFSVEHLNNFRFNL EEIESATQCFSEVNVLGKSSFSTVYKGVLRDGSIVAIKSINVTSCKPEEAEFVKGLNLLTSLRHDNLTRLRGFCCSRGRGECFLIYDFAPKGDLSRYLDL EDGSNQVLDWSTRVSIINGIAKGIRYLHSIEEKKPAIIHRRISVEKVLLDQQVNPLIADSGLAKLLADDIVFSTIKISAAMGYLAPEYVTTGLFTEKSDI YSFGVIILQILSGKQLLSNSMRLAAACCRYNDFIDTSLRGNFSESEAAKLAKIALACTDDLPDQRPTMKEVIQELNLSNAGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22730			Leucine-rich repeat protein ki...		Potri.001G117800 [exp]	0	1
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Potri.002G124400 [exp]	6.00	0.7669	Pt-ALC.1
AT4G28100			unknown protein		Potri.019G118300 [exp]	7.48	0.7524
AT3G20830			AGC (cAMP-dependent, cGMP-depe...		Potri.003G205800 [exp]	10.48	0.7809
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Potri.004G150400 [exp]	11.35	0.8041	Pt-CLB6.1
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Potri.014G070000 [exp]	12.96	0.7690
AT4G26490			Late embryogenesis abundant (L...		Potri.011G165500 [exp]	18.16	0.7735
AT3G44990		AtXTH31, XTH31,...	XYLOGLUCAN ENDOTRANSGLUCOSYLAS...		Potri.009G006600 [exp]	21.67	0.7317	XTR8.1
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Potri.002G148600 [exp]	23.95	0.6621
AT5G37780		ACAM-1, TCH1, C...	TOUCH 1, calmodulin 1 (.1.2.3)		Potri.012G041000 [exp]	27.14	0.7231	Pt-ACCAL.2
AT3G27200			Cupredoxin superfamily protein...		Potri.016G015200 [exp]	32.03	0.7536

Compare expression of checked genes

Potri.001G117800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.