Plant FIBer expression Database

Potri.001G118000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G12230 551 / 0 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G114900
[exp]
595 / 0 AT4G12230 542 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032207
[exp]
531 / 0 AT4G12230 538 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Lus10024569
[exp]
527 / 0 AT4G12230 537 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Lus10031137
[exp]
44 / 0.0002 AT4G25290 778 / 0.0 DNA photolyases;DNA photolyases (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0028 AB_hydrolase PF00561 Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence
>Potri.001G118000.1 pacid=42792065 polypeptide=Potri.001G118000.1.p locus=Potri.001G118000 ID=Potri.001G118000.1.v4.1 annot-version=v4.1
ATGAAAGGCGTCTTCTCGGCGCCCGGAGATTATGTCTACTTCAAGTCTCAAGTTCCCCTCCACAAGATCCCTATTGGCACAAAGCAATGGAGATACTATG
ATTTTGGTCCAAAAGTGGTCCCACCACTCATTTGTCTTCCTGGAATAGCAGGAACAGCAGATGTTTACTATAAGCAGATCATGGCATTGTCCTTGAAGGG
TTACCGGGTGATTTCTGTTGATACTCCACGTGTATGGAATCATCATGAGTGGATTCAAGCATTTGAAAAATTTTTGGATGTCATTGATGTTCATCATATA
CATCTTTATGGTACATCTCTTGGAGGCTTCTTAGCCCAACTTTTTGCACAACACCGTCCAAGGCGAGTGAGGTCATTGATACTATCAAACACATTTCTGG
AGACGCGCAGTTTTGCAGCTGCCATGCCTTGGGCTCCTGTTGTTGGTTGGACCCCTTCCTTTCTGCTTAAAAGATACGTCCTAACTGGAATTCGTGATGG
TCCTCATGAACCATTTATTGCAGATTCAGTAGACTTTGTTGTTTCTCAGGTCGAAACACTTTCAAGAGATGAATTAGCCTCGAGGTTGACTTTGAATGTT
GATGCTGCTTCTGTTGGATCTCTTTTACTTTCAGACTCGTTCATCACTATAATGGATACGAATGATTATTGTGCAATTCCTCAACAACTCAAAGATCAAT
TGAGTGAAAGATATCCTGAAGCAAGGCGAGCTCAGTTGAAGACTGGAGGAGATTTTCCATTTCTTTCACGCTCAGATGAAGTCAACTTGCACCTTCAGCT
ACACCTGCGACGGGTTGGGGTAGAAGCTCGACCAGACTTGGTCCGGGGCATCCCAAATGATGGCACTGGTGGGAGCTATAGTGAAAGTGAGGATGGTAAA
GGAGATCGAGATGATCAACCCAAAGATGACAGGGGAAACTCAGAGAGTCCATCCAGGGAAAGTGAGTTATCTCCAGCTCCAGAAAGTTCAGAATCTCATG
GTTTAGATGAGCAGCTCCTCAATAATGCAAAATATTCATTCAATGGTCAGCAAGAGAGACTGCGTCTCTGTGAACTATTGAGTAAACAACAGAACATAGC
CTCTGAACTCCATTCACGATTTACTCTGGAAATTTTTCTTCAATATTTGCTTTTCATTCGTGTGGGATCATTGTACATCATTTCCAAGCTGTTTCCAGAA
ACTCTAGAGAATTGGTGTAGAGTAGATATATGCACGGCTGTTCACGTGGTTGTATAA
AA sequence
>Potri.001G118000.1 pacid=42792065 polypeptide=Potri.001G118000.1.p locus=Potri.001G118000 ID=Potri.001G118000.1.v4.1 annot-version=v4.1
MKGVFSAPGDYVYFKSQVPLHKIPIGTKQWRYYDFGPKVVPPLICLPGIAGTADVYYKQIMALSLKGYRVISVDTPRVWNHHEWIQAFEKFLDVIDVHHI
HLYGTSLGGFLAQLFAQHRPRRVRSLILSNTFLETRSFAAAMPWAPVVGWTPSFLLKRYVLTGIRDGPHEPFIADSVDFVVSQVETLSRDELASRLTLNV
DAASVGSLLLSDSFITIMDTNDYCAIPQQLKDQLSERYPEARRAQLKTGGDFPFLSRSDEVNLHLQLHLRRVGVEARPDLVRGIPNDGTGGSYSESEDGK
GDRDDQPKDDRGNSESPSRESELSPAPESSESHGLDEQLLNNAKYSFNGQQERLRLCELLSKQQNIASELHSRFTLEIFLQYLLFIRVGSLYIISKLFPE
TLENWCRVDICTAVHVVV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G12230 alpha/beta-Hydrolases superfam... Potri.001G118000
[exp]
0 1
AT1G04960 Protein of unknown function (D... Potri.002G219300
[exp]
2.00 0.7582
AT5G09630 LisH/CRA/RING-U-box domains-co... Potri.001G286300
[exp]
2.64 0.8008
AT1G21780 BTB/POZ domain-containing prot... Potri.005G178400
[exp]
4.00 0.7477
AT3G03310 ATLCAT3 ARABIDOPSIS LECITHIN:CHOLESTER... Potri.008G076300
[exp]
4.58 0.7509
AT5G12180 CPK17 calcium-dependent protein kina... Potri.004G204700
[exp]
7.74 0.7110
AT1G61065 Protein of unknown function (D... Potri.004G038700
[exp]
18.97 0.7005
AT2G30000 PHF5-like protein (.1) Potri.001G277700
[exp]
19.62 0.7214
AT4G29850 Eukaryotic protein of unknown ... Potri.006G072000
[exp]
23.81 0.6736
AT5G07900 Mitochondrial transcription te... Potri.004G012900
[exp]
24.81 0.6904
AT2G23090 Uncharacterised protein family... Potri.002G120100
[exp]
24.89 0.6931

Potri.001G118000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.