Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12290 1060 / 0 Copper amine oxidase family protein (.1) AT1G62810 888 / 0 Copper amine oxidase family protein (.1) AT3G43670 857 / 0 Copper amine oxidase family protein (.1) AT1G31690 607 / 0 Copper amine oxidase family protein (.1) AT1G31710 588 / 0 Copper amine oxidase family protein (.1) AT1G31670 565 / 0 Copper amine oxidase family protein (.1) AT4G14940 548 / 0 ATAO1 amine oxidase 1 (.1) AT4G12270 530 / 0 Copper amine oxidase family protein (.1) AT4G12280 491 / 2e-170 copper amine oxidase family protein (.1) AT2G42490 249 / 1e-71 Copper amine oxidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G118200 [exp] 933 / 0 AT1G62810 961 / 0.0 Copper amine oxidase family protein (.1) Potri.010G088800 [exp] 654 / 0 AT1G31710 782 / 0.0 Copper amine oxidase family protein (.1) Potri.008G151900 [exp] 640 / 0 AT1G31690 793 / 0.0 Copper amine oxidase family protein (.1) Potri.010G089050 [exp] 632 / 0 AT1G31710 780 / 0.0 Copper amine oxidase family protein (.1) Potri.010G088900 [exp] 603 / 0 AT4G14940 904 / 0.0 amine oxidase 1 (.1) Potri.012G084400 [exp] 251 / 1e-72 AT2G42490 1250 / 0.0 Copper amine oxidase family protein (.1) Potri.010G045600 [exp] 251 / 1e-72 AT2G42490 1202 / 0.0 Copper amine oxidase family protein (.1) Potri.015G082900 [exp] 247 / 6e-71 AT2G42490 1256 / 0.0 Copper amine oxidase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024571 [exp] 1061 / 0 AT4G12290 993 / 0.0 Copper amine oxidase family protein (.1) Lus10032209 [exp] 1058 / 0 AT4G12290 996 / 0.0 Copper amine oxidase family protein (.1) Lus10024568 [exp] 867 / 0 AT1G62810 914 / 0.0 Copper amine oxidase family protein (.1) Lus10010542 [exp] 617 / 0 AT1G31710 753 / 0.0 Copper amine oxidase family protein (.1) Lus10004912 [exp] 610 / 0 AT1G31710 738 / 0.0 Copper amine oxidase family protein (.1) Lus10010540 [exp] 595 / 0 AT1G31710 761 / 0.0 Copper amine oxidase family protein (.1) Lus10021922 [exp] 594 / 0 AT4G14940 839 / 0.0 amine oxidase 1 (.1) Lus10026757 [exp] 581 / 0 AT1G31690 727 / 0.0 Copper amine oxidase family protein (.1) Lus10013356 [exp] 433 / 3e-146 AT1G31690 499 / 5e-173 Copper amine oxidase family protein (.1) Lus10041208 [exp] 275 / 3e-84 AT1G31690 369 / 9e-122 Copper amine oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [poplar] [flax] Gal_mutarotase PF01179 [poplar] [flax] Cu_amine_oxid Copper amine oxidase, enzyme domain CL0047 [poplar] [flax] CuAO_N2_N3 PF02727 [poplar] [flax] Cu_amine_oxidN2 Copper amine oxidase, N2 domain CL0047 [poplar] [flax] CuAO_N2_N3 PF02728 [poplar] [flax] Cu_amine_oxidN3 Copper amine oxidase, N3 domain
Representative CDS sequence Show only first row Show all	>Potri.001G118300.1 pacid=42792167 polypeptide=Potri.001G118300.1.p locus=Potri.001G118300 ID=Potri.001G118300.1.v4.1 annot-version=v4.1 ATGGAACCAAGAAATTTCCTCCGTTTCCTCTTTATCTTTCTTAGTGTATCTCTTGTCTTGTTCTTCACATGGGTTCATCTCCCCTATGCTCCACAACCAA ACCCCACCACTGACCTCCTCGATTGCTCCACCAACTCTCCCTGGTGCACCTCCAAGAACCGCTTTCAGCCTATCAATAAACCATCCACCGCCGATAACAT CCTCGAAAAACCACCAAATCCCAAGCACCACAACCACGAATCAGACACTCCCCATCATCCTCTGGACCCCTTAACAATCTCAGAGATCAACAAAGTCCGT ACAATCCTAAAATCGCACACCCTTTTCAAGTCATCATCTCCCTGTGCTTTCCACTCTATAGTCTTGGAAGAACCAGATAAAACACTTGTCCTTAAATGGA AAAAAGGAGACTCCATGTTACCAAGAAAAGCAGCCGTGGTCGCACGCGTGGCTGGCAAGTCACACGTGTTAACGGTGGATATAAGTTCTGGCGAGGTGGC TGTACAAGAAACGGGTTCTCGCTCAGGTTACCCCACCATGACAATAGAGGACATGACATCATCGACGTGGGCCCCGCTATCGAACGCTGATTTCAACCGT ACAATCATCGAGCGTGGAGTTGATCTTCAGGACCTTGCATGCTTGCCAATCTCTTTAGGTTGGTTTGGTGAAAATGAAGAGAACAGGAGATTGATTAAGG TGCAGTGCTACTCCATGAAGGGCACTGCAAACTTTTACATGAGACCAATAGAAGGGCTGACTGTTTTGCTTGATATGGATAGTAAAGAAGTGGTGGAGAT ATCAGATAAGGGGAGGGACATACCTATACCAAAGGCAGCCAACACTGATTATCGCTATTCTGTACAGGAAATCAATCCCGAGATGATGTTTGTCAATCCA ATTTCGATAGAGCAACCAAAAGGGCCGAGTTTTACGGTAGAAGATGAGCACTTGGTCAAATGGGCTAACTGGGAATTTCACCTTAAACCCGACCCTAGAG CTGGTGTGATCATTTCTCGGGCTAAGGTCCGGGACCCAGATAGTGGGGAGATGAGGAATGTGATGTATAAAGGGTATACTAGTGAGTTGTTTGTGCCTTA CATGGACCCCACTGATGCATGGTATTTTAAGACGTATATGGATGCGGGTGAATACGGGTTTGGGTTGCAGGCCATGCCACTTGACCCGCTTAATGATTGT CCTAGGAATGCCTATTACATGGATGGTGTGTTTGCCGCTGGTGATGGAACTCCATATGTCCGATCACATATGGTTTGCGTGTTCGAGAGTTATGCCGGTG ATATTGGATGGCGGCACTCGGAGAGTCCAATTACGGGTATGGAGATTAGAGAAGTTAGACCGAAGGTGACGCTAGTGGTTAGAATGGCAGCATCGGTTGC AAACTATGATTATATAGTTGATTGGGAGTTCCAAACTGATGGACTAATCAGAATCAAGGTTGGACTTAGTGGTATTTTGATGGTGAAAGGCACCTCTTAC GTGAACACGAACCAAGTTCCGGGTCAACAAAATCTCTATGGCACCCTTTTGTCAGAAAACGTAATCGGCGTTATACATGACCACTACATCACATTTTACC TTGACATGGACATAGATGGCTCTGATAATTCCTTTGTAAAGGTAAACATTCAAAAGCAACGGACCTCTCCCGGAGAATCACCGAGGAGGAGCTACTTAAA AGCTATAAGAAATGTGGCAAAGACAGAAAAGGATGCACAGATTCAGCTCAAACTTTATGACCCATCCGAGTTCCATGTGGTTAACCCGATGAAAAGGACT CGGGTTGGAAACCCCGTTGGGTACAAGTTGGTTCCCGGTGGCACGGCTGCTAGCTTGCTAGATCATGACGATCCTCCCCAAAAACGTGGTGCATTTACAA ATAACCAAATATGGGTCACTCCATATAACCAGAGCGAGCAATGGGCTGGTGGGTTATTTGTTTACCAGAGTCAAGGTGAAGACACTCTTGCAGTGTGGTC TGAGAGGGACCGTCCAATTGAGAACAAGGACATTGTATTGTGGTACACATTAGGCTTCCATCACGTACCGTGCCAAGAGGACTTCCCTATCATGCCAACC GTATCATCGAGTTTTGATCTGAAGCCCGTCAATTTCTTTGAGAGCAACCCAATTCTCCGGATCCCACCTAACGTTGAAAAAGATTTGCCTGTTTGCAAGC CTGCTGCTTCGGCGTGA
AA sequence Show only first row Show all	>Potri.001G118300.1 pacid=42792167 polypeptide=Potri.001G118300.1.p locus=Potri.001G118300 ID=Potri.001G118300.1.v4.1 annot-version=v4.1 MEPRNFLRFLFIFLSVSLVLFFTWVHLPYAPQPNPTTDLLDCSTNSPWCTSKNRFQPINKPSTADNILEKPPNPKHHNHESDTPHHPLDPLTISEINKVR TILKSHTLFKSSSPCAFHSIVLEEPDKTLVLKWKKGDSMLPRKAAVVARVAGKSHVLTVDISSGEVAVQETGSRSGYPTMTIEDMTSSTWAPLSNADFNR TIIERGVDLQDLACLPISLGWFGENEENRRLIKVQCYSMKGTANFYMRPIEGLTVLLDMDSKEVVEISDKGRDIPIPKAANTDYRYSVQEINPEMMFVNP ISIEQPKGPSFTVEDEHLVKWANWEFHLKPDPRAGVIISRAKVRDPDSGEMRNVMYKGYTSELFVPYMDPTDAWYFKTYMDAGEYGFGLQAMPLDPLNDC PRNAYYMDGVFAAGDGTPYVRSHMVCVFESYAGDIGWRHSESPITGMEIREVRPKVTLVVRMAASVANYDYIVDWEFQTDGLIRIKVGLSGILMVKGTSY VNTNQVPGQQNLYGTLLSENVIGVIHDHYITFYLDMDIDGSDNSFVKVNIQKQRTSPGESPRRSYLKAIRNVAKTEKDAQIQLKLYDPSEFHVVNPMKRT RVGNPVGYKLVPGGTAASLLDHDDPPQKRGAFTNNQIWVTPYNQSEQWAGGLFVYQSQGEDTLAVWSERDRPIENKDIVLWYTLGFHHVPCQEDFPIMPT VSSSFDLKPVNFFESNPILRIPPNVEKDLPVCKPAASA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12290			Copper amine oxidase family pr...		Potri.001G118300 [exp]	0	1
AT1G56560		A/N-InvA	alkaline/neutral invertase A, ...		Potri.005G010800 [exp]	2.82	0.8558
AT4G02715			unknown protein		Potri.005G211400 [exp]	5.29	0.8639
AT1G73100		SDG19, SUVH3	SET DOMAIN PROTEIN 19, SU(VAR)...		Potri.001G036800 [exp]	6.92	0.8705	SUVH3.4,SDG950
AT4G26450		WIP1	unknown protein		Potri.011G169200 [exp]	9.00	0.8667
AT1G33520		MOS2	modifier of snc1, 2, D111/G-pa...		Potri.001G129700 [exp]	10.39	0.8539
AT2G37650	GRAS	SCL9	GRAS family transcription fact...		Potri.008G057400 [exp]	10.48	0.8537
AT4G17900			PLATZ transcription factor fam...		Potri.019G051200 [exp]	11.74	0.8237
AT4G01290			unknown protein		Potri.002G163000 [exp]	12.12	0.8560
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Potri.008G042300 [exp]	17.32	0.8486
AT5G49840			ATP-dependent Clp protease (.1...		Potri.004G229400 [exp]	17.88	0.8634

Compare expression of checked genes

Potri.001G118300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.