Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12300 428 / 1e-145 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT4G12320 423 / 1e-143 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) AT4G12330 406 / 7e-137 CYP706A7 "cytochrome P450, family 706, subfamily A, polypeptide 7", cytochrome P450, family 706, subfamily A, polypeptide 7 (.1) AT4G12310 405 / 2e-136 CYP706A5 "cytochrome P450, family 706, subfamily A, polypeptide 5", cytochrome P450, family 706, subfamily A, polypeptide 5 (.1) AT5G44620 395 / 1e-132 CYP706A3 "cytochrome P450, family 706, subfamily A, polypeptide 3", cytochrome P450, family 706, subfamily A, polypeptide 3 (.1) AT4G22710 381 / 4e-127 CYP706A2 "cytochrome P450, family 706, subfamily A, polypeptide 2", cytochrome P450, family 706, subfamily A, polypeptide 2 (.1) AT4G22690 379 / 6e-126 CYP706A1 "cytochrome P450, family 706, subfamily A, polypeptide 1", cytochrome P450, family 706, subfamily A, polypeptide 1 (.1) AT5G07990 288 / 3e-91 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT5G04330 279 / 8e-88 Cytochrome P450 superfamily protein (.1) AT2G45580 274 / 1e-85 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G114400 [exp] 493 / 6e-171 AT4G12320 495 / 1e-171 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.001G118500 [exp] 474 / 2e-163 AT4G12320 627 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.005G045800 [exp] 441 / 4e-150 AT4G12300 577 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.013G073300 [exp] 303 / 6e-97 AT5G07990 711 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G113900 [exp] 301 / 1e-96 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.009G069100 [exp] 295 / 6e-94 AT5G07990 512 / 1e-178 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G016400 [exp] 291 / 4e-92 AT4G36220 761 / 0.0 ferulic acid 5-hydroxylase 1 (.1) Potri.003G118200 [exp] 286 / 1e-90 AT2G45550 438 / 9e-150 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.018G051300 [exp] 285 / 3e-90 AT5G07990 379 / 9e-127 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028914 [exp] 530 / 0 AT4G12320 461 / 3e-158 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10004331 [exp] 524 / 0 AT4G12300 449 / 1e-153 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032026 [exp] 522 / 0 AT4G12300 464 / 1e-159 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024578 [exp] 520 / 0 AT4G12320 437 / 7e-149 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10032214 [exp] 507 / 2e-176 AT4G12320 433 / 2e-147 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10032215 [exp] 507 / 5e-176 AT4G12300 462 / 1e-158 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032211 [exp] 490 / 9e-170 AT4G12320 432 / 2e-147 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10024577 [exp] 476 / 2e-164 AT4G12300 444 / 3e-152 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032213 [exp] 472 / 5e-163 AT4G12300 453 / 1e-155 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024581 [exp] 446 / 8e-154 AT4G12300 395 / 5e-134 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.001G118400.1 pacid=42790365 polypeptide=Potri.001G118400.1.p locus=Potri.001G118400 ID=Potri.001G118400.1.v4.1 annot-version=v4.1 ATGTTGAACACGGTCACTGGGTTGTGGTCACGGTGGTGGGATGCTAGCAACGAGAGACAAAAACTGTTTCTCATCATGGCAGTCACCATAATAACAATGT TCTGGTTCTTGTGGAACAATATCAAACCAAAGAAGGCAGTCGCTGCTCCGTTTCCGCCAGGTCCTCGTGGCTTGCCATTAGTTGGATACCTTCCATTTCT TGGTAATGACCTCCACAAGAAGTTCACTGAACTAGCTGGGGTCTATGGCCCTATCTACAAGCTAAGGCTCGGAAACAAATTGTGCATAGTGGTTAGCTCA CCACCACTAGCCAAAGAAATTGTTCGTGACAAGGATACCATATTTGCTGATCGTGATCCACCTATTTCCGCCCGGGTGTTCACATACGGCGGAAATGATA TCGCTTGGTCCTCTTACAGTCCTCGATGGAGAAAGATGCGCAAGGTTTTGGTGCGCGAAATGCTAGGCAATAGCCTTGATGCTTCTTATGCACTGAGAAA ACAGGAGGTTAAAAAGGCTATTAGAAAAGTGTATAATAAAATTGGCAACCCTATTGACTTTGGTGAATTGGCATATGTAACAAGCCTAAATACTGTCCTG AGAATTTTGCTGGGGGGTGGCACAATCCAAGGAGAGAAATGGACTAATTTCGTTGCACAGTTTCGGTGTCATGCAGCAGAGATGATGGTGCTATTAGGAA AACCTAATGTTTCGGACCTTTTCCCCGTCCTGGCTAGGTATGACTTGCAAGGTATAGAGAGACGATCAAAGCGATTAGCAGTCACTCTCGATGAATTTCT TGAATCTGCAATTGAGCAACGTTTGAATGAAGAAAAGGCACGTATGGATGTGAGAGAAGACTTGCTGCAGATTCTCTTGGATCTTAACAAGCATGAAGAT ACCGCAACATCAATTACGATGGACCAACTCAAAGCCATGCTAATGGACATTTTCGTGGGCGGTACTGACACAACTACTACCATGATCGAATGGACAATGG CACGACTAATGCAACATCAAGAGGTAAGGCAGAAGGTATACCAAGAATTACAGGAAGTTGTTGGAGCGAACAACACCGTAGAAGAATTCCACTTGCCCAA GTTACGGTATTTGGATGCTGTGATGAAGGAGACGTTTCGTTTGCATCCTGCACTGCCTCTCTTAGTGCCCCGTTTTTCAGGGCAATCATGCACACTAGGA GGGTATACCGTTCCTAAGGGTACTACAGTTTTTTTGAATGTTTACGCTATTCACAGGGATCCTAATCTGTGGGACAATCCCTTAGAATTTAGACCAGAGA GGTTTTTGAATGATGATACTAGCACATTTGATTACTCGGGCAACAATTTTCAGTATCTCCCATTTGGATCGGGAAGGAGGGTTTGTGCAGGACTCCGTTT AGCAGAGAAGATGCTGATGTATTTACAGGCTTCATTGTTGCACTCCTTTGAGTGGAAGCTGCCAGTTGGAGGAGTGCTGGAACTATCTGATAAATATGGC ATAGTTGTCAAGAAAAAGAAACCCTTAATAGTTATCCCAACACCTAGGCTATGTAATTTAGAGCTTTACTAG
AA sequence Show only first row Show all	>Potri.001G118400.1 pacid=42790365 polypeptide=Potri.001G118400.1.p locus=Potri.001G118400 ID=Potri.001G118400.1.v4.1 annot-version=v4.1 MLNTVTGLWSRWWDASNERQKLFLIMAVTIITMFWFLWNNIKPKKAVAAPFPPGPRGLPLVGYLPFLGNDLHKKFTELAGVYGPIYKLRLGNKLCIVVSS PPLAKEIVRDKDTIFADRDPPISARVFTYGGNDIAWSSYSPRWRKMRKVLVREMLGNSLDASYALRKQEVKKAIRKVYNKIGNPIDFGELAYVTSLNTVL RILLGGGTIQGEKWTNFVAQFRCHAAEMMVLLGKPNVSDLFPVLARYDLQGIERRSKRLAVTLDEFLESAIEQRLNEEKARMDVREDLLQILLDLNKHED TATSITMDQLKAMLMDIFVGGTDTTTTMIEWTMARLMQHQEVRQKVYQELQEVVGANNTVEEFHLPKLRYLDAVMKETFRLHPALPLLVPRFSGQSCTLG GYTVPKGTTVFLNVYAIHRDPNLWDNPLEFRPERFLNDDTSTFDYSGNNFQYLPFGSGRRVCAGLRLAEKMLMYLQASLLHSFEWKLPVGGVLELSDKYG IVVKKKKPLIVIPTPRLCNLELY

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Potri.001G118400 [exp]	0	1
AT4G28290			unknown protein		Potri.019G100601 [exp]	2.82	0.9402
AT1G07030			Mitochondrial substrate carrie...		Potri.016G125200 [exp]	9.32	0.8912
					Potri.002G109400 [exp]	11.31	0.9095
ATCG00220		ATCG00220.1, PS...	photosystem II reaction center...		Potri.013G142100 [exp]	11.74	0.8784
AT1G03430		AHP5	histidine-containing phosphotr...		Potri.004G185900 [exp]	14.49	0.8765
AT1G79120			Ubiquitin carboxyl-terminal hy...		Potri.001G439100 [exp]	20.19	0.8502
AT5G19040		ATIPT5	Arabidopsis thaliana ISOPENTEN...		Potri.008G202200 [exp]	20.78	0.8065
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Potri.004G151725 [exp]	22.69	0.8827
AT5G01015			unknown protein		Potri.006G113700 [exp]	26.94	0.8369
AT4G39250	MYB	RSM2, ATRL1	RADIALIS-LIKE SANT/MYB 2, RAD-...		Potri.009G117200 [exp]	28.91	0.8864

Compare expression of checked genes

Potri.001G118400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.