Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12320 627 / 0 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) AT4G12300 623 / 0 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT5G44620 598 / 0 CYP706A3 "cytochrome P450, family 706, subfamily A, polypeptide 3", cytochrome P450, family 706, subfamily A, polypeptide 3 (.1) AT4G12310 595 / 0 CYP706A5 "cytochrome P450, family 706, subfamily A, polypeptide 5", cytochrome P450, family 706, subfamily A, polypeptide 5 (.1) AT4G22690 591 / 0 CYP706A1 "cytochrome P450, family 706, subfamily A, polypeptide 1", cytochrome P450, family 706, subfamily A, polypeptide 1 (.1) AT4G22710 590 / 0 CYP706A2 "cytochrome P450, family 706, subfamily A, polypeptide 2", cytochrome P450, family 706, subfamily A, polypeptide 2 (.1) AT4G12330 578 / 0 CYP706A7 "cytochrome P450, family 706, subfamily A, polypeptide 7", cytochrome P450, family 706, subfamily A, polypeptide 7 (.1) AT2G45550 346 / 1e-113 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT5G07990 346 / 1e-113 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT2G45570 334 / 5e-109 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G045800 [exp] 750 / 0 AT4G12300 577 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.003G114400 [exp] 522 / 0 AT4G12320 495 / 1e-171 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.001G118400 [exp] 497 / 2e-172 AT4G12300 429 / 9e-146 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Potri.001G113900 [exp] 363 / 2e-120 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.013G073300 [exp] 358 / 2e-118 AT5G07990 711 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.003G118200 [exp] 349 / 5e-115 AT2G45550 438 / 9e-150 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150100 [exp] 338 / 1e-110 AT2G45550 510 / 3e-178 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.001G167900 [exp] 338 / 1e-110 AT5G07990 369 / 1e-122 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G085000 [exp] 339 / 2e-110 AT5G07990 402 / 5e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032223 [exp] 693 / 0 AT4G12300 621 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032222 [exp] 638 / 0 AT4G12300 582 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10028914 [exp] 489 / 4e-169 AT4G12320 461 / 3e-158 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10004331 [exp] 479 / 4e-165 AT4G12300 449 / 1e-153 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032026 [exp] 471 / 1e-162 AT4G12300 464 / 1e-159 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032215 [exp] 462 / 1e-158 AT4G12300 462 / 1e-158 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10032213 [exp] 448 / 1e-153 AT4G12300 453 / 1e-155 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024577 [exp] 447 / 2e-153 AT4G12300 444 / 3e-152 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) Lus10024578 [exp] 441 / 1e-150 AT4G12320 437 / 7e-149 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Lus10032211 [exp] 439 / 8e-150 AT4G12320 432 / 2e-147 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.001G118500.2 pacid=42791375 polypeptide=Potri.001G118500.2.p locus=Potri.001G118500 ID=Potri.001G118500.2.v4.1 annot-version=v4.1 ATGACCCCCCTTACAAATTTTCTTGAAAATTGTAATATAGATGCTTCTACAAGCACAATAGCCACTCTCTTGACTCTCTTTGCTATTATTTGGTATGCAC GGAGACGTGCCGAATCCAAGAAGGGACGTCCATCTCTACCCCCTGGTCCAAGAGGGCTCCCATTAATTGGCAATCTAGCTTCTCTTGACCCAGATCTTCA CACATACTTTGCTGGGCTAGCGCGCACTTACGGACCAATCTTGAAGCTGCGGCTTGGCTCCAAGCTTGGCATCATAGTGAGCTCCCCTAATTTGGCTCGC GAAGTTCTTAAAGACCATGACATAACATTTGCTAACCGTGATGTGCCTGATGTTGCCCGGATAGCAGCCTATGGTGGGTCAGATATAGCCTGGAGCCCAT ATGGGCCAGAGTGGAGGATGCTAAGAAAAGTTTGTGTCCTCAAAATGCTCAGCAACTCAACGTTAGACTCGGTTTACGAGCTTCGCCGCCGCGAAGTGCG AAACATCATTGCTTACATATATAGTAAGCCCGGGTCACCCATCAACGTGGGAGAGCAAACTTTTCTGACAATATTGAATGTTGTAACGAGCATGTTATGG GGTGGCACGGTCCAAGGTGAAGAAAGGGGTAGCCTAGGTGCTGAATTTAGGCGGGTTGTGGCTGACATGACTGAGTTATTGGGGGCGCCAAACATTTCAG ATTTTTTTCCTGCCTTGGCCAGATTCGATTTGCAAGGCCTTGTAAAAAAGATGAGTGGTTTGGCCCCAAAGTTTGATCAGATTTTTGACAGGATGATTGA AAAACAATTGAGCATTGATGCGTTGGGGGATACAGCAGGGGCGAGTAGCAAAGACTTTCTGCAGTTTCTGTTGAAAGTGAAGGATGAAGGAGATGTCAAG ACGCCATTAACCATGACCCACATCAAAGCCTTGCTTATGGATATGGTTGTCGGTGGTTCAGACACATCCTCTAACGCAATTGAGTTTGCCTTTGCTGAAG TCATGAACAAGCCAGAAGTAATGAGAAAAGCTCAAGATGAATTGGACAGAGTAGTTGGCAAGGACAACATAGTAGAGGAGTCTCACATACACAAATTGCC ATACTTGCATGCCATCATGAAAGAATCATTGAGGTTGCACCCAGTTCTCCCACTGCTAATCCCTCATTGCCCTAGTGAAACATGCACTATTGGAGGCTTC TCTGTTCCAAAGGGTGCTCGAGTTTTTATCAATGTATGGGCAGTACACAGGGACCCTTCAATCTGGGAAAATCCTTTGGAATTTAAACCGGAGAGGTTCT TGAACAGTAAATTTGACTACAGTGGAAGTGACTTCAATTATTTCCCGTTTGGATCCGGAAGGAGAATTTGTGCTGGGATAGCAATGGCTGAGAGGATGTT TCTGTATTTCCTTGCTACACTTCTGCATTCTTTTGATTGGAAATTACCTGAAGGTAAGCAAATGGATCTTACGGAGAAGTTTGGGATTGTTTTGAAGTTG AAGAACCCTCTTGTTGCAATTCCAACACCAAGATTATCCAATCCAGCTCTCTACGCGTAG
AA sequence Show only first row Show all	>Potri.001G118500.2 pacid=42791375 polypeptide=Potri.001G118500.2.p locus=Potri.001G118500 ID=Potri.001G118500.2.v4.1 annot-version=v4.1 MTPLTNFLENCNIDASTSTIATLLTLFAIIWYARRRAESKKGRPSLPPGPRGLPLIGNLASLDPDLHTYFAGLARTYGPILKLRLGSKLGIIVSSPNLAR EVLKDHDITFANRDVPDVARIAAYGGSDIAWSPYGPEWRMLRKVCVLKMLSNSTLDSVYELRRREVRNIIAYIYSKPGSPINVGEQTFLTILNVVTSMLW GGTVQGEERGSLGAEFRRVVADMTELLGAPNISDFFPALARFDLQGLVKKMSGLAPKFDQIFDRMIEKQLSIDALGDTAGASSKDFLQFLLKVKDEGDVK TPLTMTHIKALLMDMVVGGSDTSSNAIEFAFAEVMNKPEVMRKAQDELDRVVGKDNIVEESHIHKLPYLHAIMKESLRLHPVLPLLIPHCPSETCTIGGF SVPKGARVFINVWAVHRDPSIWENPLEFKPERFLNSKFDYSGSDFNYFPFGSGRRICAGIAMAERMFLYFLATLLHSFDWKLPEGKQMDLTEKFGIVLKL KNPLVAIPTPRLSNPALYA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Potri.001G118500 [exp]	0	1
AT1G66330			senescence-associated family p...		Potri.017G129100 [exp]	4.00	0.7283
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Potri.004G062300 [exp]	29.84	0.7116
AT1G73660			protein tyrosine kinase family...		Potri.015G040100 [exp]	32.03	0.6632
AT4G26620			Sucrase/ferredoxin-like family...		Potri.001G369300 [exp]	37.64	0.6824
AT3G08040		ATFRD3, MAN1, F...	MANGANESE ACCUMULATOR 1, FERRI...		Potri.009G061100 [exp]	38.34	0.6721	Pt-FRD3.1
AT5G35732			unknown protein		Potri.002G222900 [exp]	39.57	0.6803
AT1G17100			SOUL heme-binding family prote...		Potri.001G067100 [exp]	41.49	0.6988
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Potri.004G121800 [exp]	42.98	0.6980
AT3G51630		ATWNK5, ZIK1, W...	with no lysine (K) kinase 5 (....		Potri.016G134600 [exp]	45.60	0.6750
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Potri.016G122801 [exp]	46.28	0.6816

Compare expression of checked genes

Potri.001G118500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.