Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22670 334 / 1e-111 ATHIP1, TPR11 tetratricopeptide repeat 11, HSP70-interacting protein 1 (.1) AT3G17880 290 / 4e-95 ATHIP2, ATTDX HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) AT4G12400 69 / 2e-12 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT1G62740 67 / 6e-12 Hop2 Hop2, stress-inducible protein, putative (.1) AT3G58620 62 / 4e-10 TTL4 tetratricopetide-repeat thioredoxin-like 4 (.1) AT1G12270 62 / 4e-10 Hop1 Hop1, stress-inducible protein, putative (.1) AT1G04190 60 / 1e-09 TPR3 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G42580 56 / 3e-08 VIT, TTL3 VHI-INTERACTING TPR CONTAINING PROTEIN, tetratricopetide-repeat thioredoxin-like 3 (.1) AT3G04710 51 / 7e-07 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT4G30480 49 / 4e-06 TPR1, AtTPR1 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G114000 [exp] 381 / 4e-130 AT4G22670 335 / 5e-112 tetratricopeptide repeat 11, HSP70-interacting protein 1 (.1) Potri.015G036000 [exp] 293 / 2e-96 AT3G17880 396 / 3e-137 HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) Potri.012G045000 [exp] 254 / 8e-82 AT3G17880 379 / 4e-131 HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) Potri.001G119500 [exp] 67 / 1e-11 AT4G12400 864 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.013G042300 [exp] 64 / 5e-11 AT3G04710 619 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.005G054800 [exp] 64 / 1e-10 AT3G04710 611 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.003G113400 [exp] 64 / 1e-10 AT4G12400 830 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.005G014100 [exp] 57 / 1e-08 AT1G56440 476 / 1e-165 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.008G156500 [exp] 56 / 2e-08 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032227 [exp] 341 / 2e-114 AT4G22670 403 / 2e-138 tetratricopeptide repeat 11, HSP70-interacting protein 1 (.1) Lus10024590 [exp] 332 / 6e-111 AT4G22670 394 / 9e-135 tetratricopeptide repeat 11, HSP70-interacting protein 1 (.1) Lus10031334 [exp] 287 / 2e-93 AT3G17880 456 / 3e-160 HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) Lus10032234 [exp] 71 / 6e-13 AT1G62740 892 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10028919 [exp] 71 / 6e-13 AT1G62740 890 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10024597 [exp] 70 / 1e-12 AT1G62740 886 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10004336 [exp] 67 / 8e-12 AT1G62740 873 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10018004 [exp] 64 / 9e-11 AT3G17970 711 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10042001 [exp] 61 / 1e-09 AT3G17970 714 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10025656 [exp] 57 / 1e-08 AT4G08320 379 / 9e-130 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.001G118900.1 pacid=42788786 polypeptide=Potri.001G118900.1.p locus=Potri.001G118900 ID=Potri.001G118900.1.v4.1 annot-version=v4.1 ATGGACGCCACAACAGTAGAAGAATTGAAGCAATTTATTGAACAGTGCAAATCCAGTCCATCCATCCTCGCCGATCCTTCCCTTTTCTTCTTCCGCGACT ACCTCGAAAGTCTCGGCGCTAAGCTCCCCGCCTCTGCTCGCAAGAAGAGCTATGTTGTCGAGGAGAGTGATGAAGAGATGGAGGAGAAGGAAGAGTCACA AGTAGAACCTCAAGTCGAAGAGGAGGAGGAGGAGGAGGAGATTATTGAATCCGATCTTGAGCTCGAAGGCGACACTGTTGACCCTGATAATGATCCTCCA CAAAAGATGGGAGACCCGTCGGTAGAGGTTACAGATGAATGTCGCGATGCTTCTCAAGAGGCCAAGGCTAAAGCCATGGAAGCTCTCTCTCAAGGTAAAC TTGAGGAAGCGATTGAACATTTGACAGAAGCAATTTCTCTCAATCCTACATCAGCAATCATGTATGCCACAAGAGCTACTGTTTACATCAAAATGAAGAA GCCCAATGCTGCTATCCGGGATGCTAATGCAGCTCTTGAGATTAACCCGGATTCAGCTAAGGGATACAAGTCTCGTGGCATGGCACAGGCAATGCTAGGT CAGTGGGAAGATGCTGCCAAGGATCTTCACCTGGCATCGAAGTTAGATTATGATGAGGAGATAAGTGCTGTACTTAAGAAGGTTGAACCAAATGCACACA GGATTGAGGAACACCGCAGGAAGTATGAAAGGCTACACAAAGAGAGGGGCGATAGGAAAGCTGAGCGTGAGAGGCAACGCCGTCGTGCTAAAGCTCAGGC TGACTATGAGAAGGCCAAGAAGCAAGAGCAGTCATCTTCCAGTAGAAAACCTGGAGGCATGCCAGGTGGATTTCCAGGTGGGATGCCGGGAGGTTTCCCA GGTGCCATGCCTGGGGGAATGCCTGGAGGTTTCCCAGGTGCCATGCCAGGGGGGATGCCTGGAGGTTTCCCAGGTGCCATGCCAGGAGGGATGCCAGGAG GGATGCCTGGAGGTTTCCCCGGTGCCATGCCAGGAGGGATGCCTGGAAATATTGATTTTAGCAAAATATTGAATGACCCTGAATTGATGGCCGCATTTAG TGATCCAGAAATCATGGCTGCACTTCAAGATGTAATGAAGAACCCAGCTAATCTTGCTAAGCATCAAGCAAACCCCAAGGTGGCTCCTACAATTGCAAAG ATGATGGGCAAATTTGCAGGACCTCAATGA
AA sequence Show only first row Show all	>Potri.001G118900.1 pacid=42788786 polypeptide=Potri.001G118900.1.p locus=Potri.001G118900 ID=Potri.001G118900.1.v4.1 annot-version=v4.1 MDATTVEELKQFIEQCKSSPSILADPSLFFFRDYLESLGAKLPASARKKSYVVEESDEEMEEKEESQVEPQVEEEEEEEEIIESDLELEGDTVDPDNDPP QKMGDPSVEVTDECRDASQEAKAKAMEALSQGKLEEAIEHLTEAISLNPTSAIMYATRATVYIKMKKPNAAIRDANAALEINPDSAKGYKSRGMAQAMLG QWEDAAKDLHLASKLDYDEEISAVLKKVEPNAHRIEEHRRKYERLHKERGDRKAERERQRRRAKAQADYEKAKKQEQSSSSRKPGGMPGGFPGGMPGGFP GAMPGGMPGGFPGAMPGGMPGGFPGAMPGGMPGGMPGGFPGAMPGGMPGNIDFSKILNDPELMAAFSDPEIMAALQDVMKNPANLAKHQANPKVAPTIAK MMGKFAGPQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22670		ATHIP1, TPR11	tetratricopeptide repeat 11, H...		Potri.001G118900 [exp]	0	1
AT2G02560		TIP120, HVE, ET...	HEMIVENATA, CULLIN-ASSOCIATED ...		Potri.004G229300 [exp]	1.41	0.7101	CAND1.3
AT4G22670		ATHIP1, TPR11	tetratricopeptide repeat 11, H...		Potri.003G114000 [exp]	2.44	0.6410
AT2G04235			unknown protein		Potri.001G315950 [exp]	6.16	0.6865
AT5G25080			Sas10/Utp3/C1D family (.1)		Potri.018G018100 [exp]	10.72	0.6183
AT1G78060			Glycosyl hydrolase family prot...		Potri.002G093900 [exp]	11.22	0.6113
AT1G71220		UGGT, PSL2, EBS...	PRIORITY IN SWEET LIFE 2, EMS-...		Potri.003G018900 [exp]	14.56	0.6222
AT1G23550		SRO2	similar to RCD one 2 (.1)		Potri.006G231500 [exp]	15.00	0.6012
AT5G54800		ATGPT1, GPT1	ARABIDOPSIS GLUCOSE 6-PHOSPHAT...		Potri.011G135900 [exp]	19.97	0.6086	GPT.1
AT1G19270		DA1	DA1 (.1)		Potri.002G132700 [exp]	24.45	0.5765
AT4G11270			Transducin/WD40 repeat-like su...		Potri.001G098700 [exp]	24.73	0.5803

Compare expression of checked genes

Potri.001G118900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.