Plant FIBer expression Database

Potri.001G119100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G62780 318 / 1e-110 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032229
[exp]
333 / 4e-116 AT1G62780 324 / 2e-112 unknown protein
Lus10024592
[exp]
325 / 2e-113 AT1G62780 319 / 3e-111 unknown protein
PFAM info
Representative CDS sequence
>Potri.001G119100.13 pacid=42789434 polypeptide=Potri.001G119100.13.p locus=Potri.001G119100 ID=Potri.001G119100.13.v4.1 annot-version=v4.1
ATGGCCTCTCTTACACTCAGCGGCTTCAGCATGACTGTCCGTACAAGGCCAATCACAAGAACCAATCACAAACCCTGCAGAATCTCCTGCGTTAAATGGG
ACCCAGAGGGGCTATATGGGCCACCACAAACAGGCCATTTGGCTCGACGGGAGATCAATAGAAGGCTCGAGAAAGACGCAGAGTTTCGCGAGGCACTTGA
GATGCAAGCCCGTGAAGAAAAACAGCGTCGCCACGCTCTTCGTCAATCTAGGGTGATACCGGACACTTCAGAAAAGCTGATAGAGTACTTTCTTGATACT
GAAGCTCAAGAGATTGAGTTTGAGATTGCTAGACTGAGGCAACGATTGAACCATGAATTTTTCTCGCAGCTACAATTTGAACTGGGGCAGCTTCGTTTTG
CTGTTTCAAAAACTGAGGAGATGGAAGACAGATTGATTGAGTTGGAAGCACTACAGAAAGCTCTGAAGGAAGGAACAGAAGCCTACGATAAAATGCAAGG
TGAACTTGTAAAAGCAAAGAAAAGCCTGACAAAAATATTGACATCAAAGGATGTAAAAGCCACTTTGCTGGAAATGGTTGAGCAGAATGAACTTAACAGA
TCATTGTTAACGCTTCTTGATGAAAACATAGCAAGCGCCAACCAAGGTAAACAGAAAGAAGCAGCAGCTTTCATGGAAAAGCTGCGTGCAGCTGTTCTCA
AGTACATGACAGTTTAG
AA sequence
>Potri.001G119100.13 pacid=42789434 polypeptide=Potri.001G119100.13.p locus=Potri.001G119100 ID=Potri.001G119100.13.v4.1 annot-version=v4.1
MASLTLSGFSMTVRTRPITRTNHKPCRISCVKWDPEGLYGPPQTGHLARREINRRLEKDAEFREALEMQAREEKQRRHALRQSRVIPDTSEKLIEYFLDT
EAQEIEFEIARLRQRLNHEFFSQLQFELGQLRFAVSKTEEMEDRLIELEALQKALKEGTEAYDKMQGELVKAKKSLTKILTSKDVKATLLEMVEQNELNR
SLLTLLDENIASANQGKQKEAAAFMEKLRAAVLKYMTV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G62780 unknown protein Potri.001G119100
[exp]
0 1
AT1G60230 Radical SAM superfamily protei... Potri.010G040700
[exp]
1.00 0.9792
AT3G10405 unknown protein Potri.008G034900
[exp]
2.00 0.9714
AT1G31190 IMPL1 myo-inositol monophosphatase l... Potri.012G120492
[exp]
3.87 0.9679
AT4G29590 S-adenosyl-L-methionine-depend... Potri.006G150500
[exp]
6.63 0.9687
AT1G44920 unknown protein Potri.002G114900
[exp]
7.54 0.9692
AT5G62790 PDE129, DXR PIGMENT-DEFECTIVE EMBRYO 129, ... Potri.012G080900
[exp]
8.00 0.9551 DXR.1
AT4G37040 MAP1D methionine aminopeptidase 1D (... Potri.005G137400
[exp]
14.28 0.9583 MAP1.2
AT2G27680 NAD(P)-linked oxidoreductase s... Potri.009G146000
[exp]
15.29 0.9604
AT4G15545 unknown protein Potri.010G027400
[exp]
15.49 0.9522
AT3G51820 PDE325, ATG4, G... PIGMENT DEFECTIVE 325, UbiA pr... Potri.006G102100
[exp]
16.24 0.9648

Potri.001G119100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.