Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	STI.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12400 864 / 0 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT1G12270 852 / 0 Hop1 Hop1, stress-inducible protein, putative (.1) AT1G62740 850 / 0 Hop2 Hop2, stress-inducible protein, putative (.1) AT1G04190 86 / 3e-18 TPR3 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G08320 85 / 2e-17 TPR8 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G42810 84 / 6e-17 AtPP5, PP5.2, PP5, PAPP5 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) AT3G04710 79 / 1e-15 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT1G53300 73 / 2e-13 TTL1 tetratricopetide-repeat thioredoxin-like 1 (.1) AT4G22670 68 / 8e-12 ATHIP1, TPR11 tetratricopeptide repeat 11, HSP70-interacting protein 1 (.1) AT3G17970 68 / 1e-11 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G113400 [exp] 971 / 0 AT4G12400 830 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.010G082900 [exp] 96 / 2e-21 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G156500 [exp] 96 / 2e-21 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G177400 [exp] 92 / 2e-19 AT4G08320 406 / 1e-139 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.014G141800 [exp] 82 / 2e-16 AT2G42810 895 / 0.0 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) Potri.005G054800 [exp] 81 / 4e-16 AT3G04710 611 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.013G042300 [exp] 80 / 1e-15 AT3G04710 619 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.012G046900 [exp] 75 / 6e-14 AT3G17970 744 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.015G038600 [exp] 75 / 7e-14 AT3G17970 747 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032234 [exp] 884 / 0 AT1G62740 892 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10024597 [exp] 882 / 0 AT1G62740 886 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10028919 [exp] 880 / 0 AT1G62740 890 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10004336 [exp] 860 / 0 AT1G62740 873 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10041189 [exp] 97 / 6e-22 AT1G04190 516 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021905 [exp] 89 / 6e-19 AT1G04190 515 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018179 [exp] 85 / 2e-17 AT4G08320 389 / 9e-134 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10025656 [exp] 85 / 2e-17 AT4G08320 379 / 9e-130 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10003260 [exp] 81 / 7e-16 AT3G04710 587 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Lus10006559 [exp] 80 / 1e-15 AT3G04710 581 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00515 [poplar] [flax] TPR_1 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF13371 [poplar] [flax] TPR_9 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.001G119500.1 pacid=42793350 polypeptide=Potri.001G119500.1.p locus=Potri.001G119500 ID=Potri.001G119500.1.v4.1 annot-version=v4.1 ATGGCCGAAGAAGCCAAAGCCAAAGGCAACGCTGCCTTTTCTACCGGCGATTACACCGCCGCCGTCAAGCACTTCACAAACGCCATTGCTCTTTCTCCAA CTAATCACGTCCTCTACTCTAACCGATCGGCGGCTCACGCTTCTCTCCACAACTACGCCGATGCTCTACAAGACGCTAAGAAAACCGTTGAGTTGAAGCC GGACTGGTCCAAAGGCTACTCTCGGCTCGGCGCCGCTCACCTCGGCTTGCACCAAATCCAAGACGCTATCTCTGCCTACAAGAAAGGACTCGAGATTGAT CCTAACAATGAAGGATTAAAATCTGGCTTGGCTGATGCTCAAGCAGCTGCCTCCAGAAGCCGTGCAGCGCCACCGCCGAGTCCGTTTGGTGATGCTTTCT CCGGTCCAGAGATGTGGGCGAAGTTAACGGCGGATCCGTCCACGAGAATGTATTTGCAGCAGCCCGATTTTGTTAAGATGATGCAAGAAATTCAGAAAAC CCCTAATAATCTGAATCTCTACTTGAAGGATCAGAGAGTGATGCAGGCTTTGGGGGTTTTGTTGAATGTGAAGTTTAGAGAACCGAATGCAGGGGACGAT ATGGAGATTCCGGAGGGGACGTCCACTCCGCAGCCGCCTGCGCCGGAGAGGAAGGAGGAGAAGAAGGTGGAGGAGGAGAAGGTGGTGGAACCAGAGCCAA TGGAGGTAACGGAGGAGAAGGAAGCGAAGGAGAGGAAGGCGCAAGCAGTGAAAGAAAAGGAGTTGGGGAATGCTGCTTATAAAAAGAAGGAATTTGAGAA GGCTATTGAGCATTATACGAAGGCAATGGAGCTTGATGATGAGGATATTTCGTATTTGACGAACCGTGCTGCTGTTTATTTGGAGATGGGGAAGAATGCC AAATGTATTAAAGATTGTGACAAAGCTGTTGAAAGGGGTAGAGAGCTTAGATCAGATTTTAAGATGGTAGCAAGAGCATTGACAAGGAAAGGAACTGCCT TGGCAAAAATGGCAAGATGCTCGAAGGACTATGAACGAGCCATTGAGACCTTCCAGAAGGCCCTGACAGAGCATCGCAATCCTGACACATTGAAGAAACT AAACGACGCAGAGAAAGCAAAGAAGGATCTTGAGCAACAAGAATACTTTGATCCAAAATTGGCTGAGGAAGAGCGTGAGAAAGGCAATGAATATTTCAAG CAGCAAAAGTATCCAGAGGCTGTGAAGCACTACACAGAATCTTTGAGAAGGAATCCTAAAGATCCCAAGGCATATAGTAACAGAGCTGCATGCTACACTA AACTAGGAGCTCTGCCTGAGGGATTGAAGGATGCAGAGAAGTGCATTGAACTTGATCCAACTTTTTCCAAGGGTTATACAAGAAAAGGTGCTGTTCAATT CTTTATGAAAGAGTATGATAAAGCTTTGGAAACTTATCAGGAGGGTCTGAAACATGACCCCCATAACCAGGACTTGCTAGATGGTGTCAGAAGGTGTGTG GAGCAGCTCAATAAGGCCAGCCGTGGTGACCTAACCCCTGAGGAACTGAAGGAGAGACAGGCCAAGGCAATGCAGGACCCAGAAATTCAAAACATCCTCT CAGATCCTGTCATGAGACAGGTGTTGGTTGACTTCCAAGAGAACCCTAAGGCCGCTCAGGAACACACAAAGAACCCGATGGTGATGAGCAAGATTCAGAA GCTTGTCCATGCTGGGATCGTCCAGATGAGATAG
AA sequence Show only first row Show all	>Potri.001G119500.1 pacid=42793350 polypeptide=Potri.001G119500.1.p locus=Potri.001G119500 ID=Potri.001G119500.1.v4.1 annot-version=v4.1 MAEEAKAKGNAAFSTGDYTAAVKHFTNAIALSPTNHVLYSNRSAAHASLHNYADALQDAKKTVELKPDWSKGYSRLGAAHLGLHQIQDAISAYKKGLEID PNNEGLKSGLADAQAAASRSRAAPPPSPFGDAFSGPEMWAKLTADPSTRMYLQQPDFVKMMQEIQKTPNNLNLYLKDQRVMQALGVLLNVKFREPNAGDD MEIPEGTSTPQPPAPERKEEKKVEEEKVVEPEPMEVTEEKEAKERKAQAVKEKELGNAAYKKKEFEKAIEHYTKAMELDDEDISYLTNRAAVYLEMGKNA KCIKDCDKAVERGRELRSDFKMVARALTRKGTALAKMARCSKDYERAIETFQKALTEHRNPDTLKKLNDAEKAKKDLEQQEYFDPKLAEEEREKGNEYFK QQKYPEAVKHYTESLRRNPKDPKAYSNRAACYTKLGALPEGLKDAEKCIELDPTFSKGYTRKGAVQFFMKEYDKALETYQEGLKHDPHNQDLLDGVRRCV EQLNKASRGDLTPEELKERQAKAMQDPEIQNILSDPVMRQVLVDFQENPKAAQEHTKNPMVMSKIQKLVHAGIVQMR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12400		Hop3	Hop3, stress-inducible protein...		Potri.001G119500 [exp]	0	1	STI.2
AT5G56000		Hsp81.4, AtHsp9...	HEAT SHOCK PROTEIN 90.4, HEAT ...		Potri.016G003400 [exp]	1.73	0.8928
AT4G12400		Hop3	Hop3, stress-inducible protein...		Potri.003G113400 [exp]	5.91	0.9189	STI.3
AT5G56000		Hsp81.4, AtHsp9...	HEAT SHOCK PROTEIN 90.4, HEAT ...		Potri.001G286700 [exp]	8.36	0.7712
AT1G74340		DPMS2, DPMS	dolichol phosphate mannose syn...		Potri.003G095701 [exp]	10.34	0.7393
AT4G39210		APL3	Glucose-1-phosphate adenylyltr...		Potri.004G157100 [exp]	12.16	0.8943	APL3.1
AT4G35870			early-responsive to dehydratio...		Potri.005G108600 [exp]	19.23	0.7685
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Potri.015G013900 [exp]	19.74	0.8347
AT3G25230		ROF1, ATFKBP62	FK506 BINDING PROTEIN 62, rota...		Potri.002G248300 [exp]	21.49	0.8566
AT4G02890		UBQ14	Ubiquitin family protein (.1.2...		Potri.017G135600 [exp]	22.09	0.8676	Pt-SUBI.8
AT3G12050			Aha1 domain-containing protein...		Potri.006G194400 [exp]	22.44	0.7583

Compare expression of checked genes

Potri.001G119500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.