Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62730 408 / 3e-144 Terpenoid synthases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032248 [exp] 426 / 4e-151 AT1G62730 457 / 1e-163 Terpenoid synthases superfamily protein (.1) Lus10024610 [exp] 425 / 4e-151 AT1G62730 467 / 1e-167 Terpenoid synthases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [poplar] [flax] Terp_synthase PF00494 [poplar] [flax] SQS_PSY Squalene/phytoene synthase
Representative CDS sequence Show only first row Show all	>Potri.001G119700.2 pacid=42793492 polypeptide=Potri.001G119700.2.p locus=Potri.001G119700 ID=Potri.001G119700.2.v4.1 annot-version=v4.1 ATGAACGGTGCTTCTAGTAGCTTACGAACAGCTTTCTCCTATTGTGTACAGCAAGTGCGAAATTATGATTACCATCACTATCTCTGCCTCCTTGAACTTC CTCCTAACATCCGGAAGGCTGCATTCGCACTCCGTGCCTTCAATGTTGAAACTGCCAGAGCTATGGATGTTGCTTCAGATCCCAGGATTGGTCTTATGCG CCTTCTGTGGTGGCAAGAAGCTATAGATAAGATCTACGCTAACAAAGTAATTGAGCACCCAGCAGCCCAGGCTCTCTCATCAGTGATATCTGAGAATAGA ATTAGCAAGGGCTGGCTGAAACGGCCTGTTGAAGCTCGGATTAATGATGCTAGGAGAGAGGTTACTGACATCCCAGAAACAATAGAAGAGTTGGAAAAAT ATGCCGAGGACACTATATCAACCCTTTTGTATATGACTCTTCAAGCTGGTGGTATCAGGTCCACTGCAGCTGATCATGCAGCATCACATGCTGGTAAGGC AAGTGGCCTTCTTTTGCTGCTTAGATCACTTCCATATCATGCTAGTCGCAACCGACACTTTTGTTACATACCAACTGAAGTGGCAGCCAAACACGGGTTG CTGGTTAAGGAGGGAGGTCGATTTGAAATCCGCTTGGATTCACGCGAGAGTTTATGTAATGCTGTATTTGATATGGCATCAGTAGCCAATGTTCATTTGC AGAAGGCTCGTTCATTAGCTGGAACAGTCCCCACTGAGGCTCGTTCAGTGCTTCTGCCAGCTGTGCCTGCCCAAGTTTTCTTGGACACCCTGAGTCGGGT ACATTTTGATGTGTTTGATCCAAGGTTAGCACGTGGAGTTCTGGGTATTTCTCCTGTATCGTACCAGTTGAAACTAAAGTGGTCTTCGTGGAGGGGCAAA TACTGA
AA sequence Show only first row Show all	>Potri.001G119700.2 pacid=42793492 polypeptide=Potri.001G119700.2.p locus=Potri.001G119700 ID=Potri.001G119700.2.v4.1 annot-version=v4.1 MNGASSSLRTAFSYCVQQVRNYDYHHYLCLLELPPNIRKAAFALRAFNVETARAMDVASDPRIGLMRLLWWQEAIDKIYANKVIEHPAAQALSSVISENR ISKGWLKRPVEARINDARREVTDIPETIEELEKYAEDTISTLLYMTLQAGGIRSTAADHAASHAGKASGLLLLLRSLPYHASRNRHFCYIPTEVAAKHGL LVKEGGRFEIRLDSRESLCNAVFDMASVANVHLQKARSLAGTVPTEARSVLLPAVPAQVFLDTLSRVHFDVFDPRLARGVLGISPVSYQLKLKWSSWRGK Y

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G62730			Terpenoid synthases superfamil...		Potri.001G119700 [exp]	0	1
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Potri.008G166800 [exp]	27.42	0.7296	CMDH.2
AT1G17890		GER2	NAD(P)-binding Rossmann-fold s...		Potri.006G179100 [exp]	50.49	0.6848
AT2G27260			Late embryogenesis abundant (L...		Potri.001G218300 [exp]	71.65	0.7010
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Potri.007G100000 [exp]	73.04	0.6880
AT2G31440			unknown protein		Potri.007G127400 [exp]	75.97	0.6555
AT5G47420			Tryptophan RNA-binding attenua...		Potri.001G155900 [exp]	91.99	0.6307
AT5G20590		TBL5	TRICHOME BIREFRINGENCE-LIKE 5 ...		Potri.018G133000 [exp]	102.40	0.6619
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Potri.010G226600 [exp]	143.98	0.6473
AT5G25830	GATA	GATA12	GATA transcription factor 12 (...		Potri.006G237700 [exp]	173.18	0.6357

Compare expression of checked genes

Potri.001G119700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.