Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62710 719 / 0 BETAVPE, BETA-VPE beta vacuolar processing enzyme (.1) AT4G32940 569 / 0 GAMMAVPE, GAMMA-VPE gamma vacuolar processing enzyme (.1) AT2G25940 565 / 0 ALPHAVPE, ALPHA-VPE alpha-vacuolar processing enzyme (.1) AT3G20210 421 / 1e-143 DELTAVPE, DELTA-VPE delta vacuolar processing enzyme (.1.2) AT1G08750 87 / 2e-18 Peptidase C13 family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G113300 [exp] 918 / 0 AT1G62710 704 / 0.0 beta vacuolar processing enzyme (.1) Potri.018G059400 [exp] 581 / 0 AT4G32940 752 / 0.0 gamma vacuolar processing enzyme (.1) Potri.006G232900 [exp] 576 / 0 AT4G32940 742 / 0.0 gamma vacuolar processing enzyme (.1) Potri.008G003400 [exp] 478 / 2e-165 AT2G25940 534 / 0.0 alpha-vacuolar processing enzyme (.1) Potri.019G014000 [exp] 87 / 3e-18 AT1G08750 608 / 0.0 Peptidase C13 family (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024599 [exp] 724 / 0 AT1G62710 709 / 0.0 beta vacuolar processing enzyme (.1) Lus10032236 [exp] 719 / 0 AT1G62710 712 / 0.0 beta vacuolar processing enzyme (.1) Lus10007450 [exp] 581 / 0 AT4G32940 754 / 0.0 gamma vacuolar processing enzyme (.1) Lus10024446 [exp] 551 / 0 AT4G32940 717 / 0.0 gamma vacuolar processing enzyme (.1) Lus10033344 [exp] 456 / 1e-157 AT2G25940 473 / 3e-164 alpha-vacuolar processing enzyme (.1) Lus10034798 [exp] 248 / 1e-78 AT2G25940 260 / 9e-84 alpha-vacuolar processing enzyme (.1) Lus10034797 [exp] 106 / 6e-28 AT3G20210 104 / 4e-28 delta vacuolar processing enzyme (.1.2) Lus10006570 [exp] 88 / 2e-18 AT1G08750 578 / 0.0 Peptidase C13 family (.1.2.3) Lus10005520 [exp] 87 / 3e-18 AT1G08750 582 / 0.0 Peptidase C13 family (.1.2.3) Lus10006571 [exp] 50 / 3e-06 AT1G08750 460 / 1e-163 Peptidase C13 family (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0093 [poplar] [flax] Peptidase_CD PF01650 [poplar] [flax] Peptidase_C13 Peptidase C13 family
Representative CDS sequence Show only first row Show all	>Potri.001G119800.1 pacid=42790499 polypeptide=Potri.001G119801.1.p locus=Potri.001G119800 ID=Potri.001G119800.1.v4.1 annot-version=v4.1 ATGGAGACCCACAAGGCCTATTTTTTGTCTGCTATTTTAGTGCTTGCGATGCTGTCTTTTCTACATGTACAGAGTGTTCAAGCCGCCCGGTTGAACCCGG TTGAACCAAGGATTCTTATGCCAACAGGGAAAGATGAGCCAGAAGTCGATGATGATGGTGAAGAAATTGGCTCGAGATGGGCGGTTCTTGTGGCCGGTTC AAGTGGTTATGGAAATTACAGGCATCAGGCGGATGTCTGCCATGCATATCAACTATTAAGAAAAGGCGGGATAAAAGAAGAGAACATGGTGGTGTTTATG TATGATGATATAGCCATGCATCATTTGAACCCAAGGCCTGGAGTTATCATCAACCATCCACAAGGAGATGATGTTTATGCTGGTGTGCCTAAGGATTACA CTGGTGAACAGGTTAATACTGAGAATCTGTATGCAGTACTTCTTGGTAACAAGAGTGCTGTCAAGGGTGGAAGTGGCAAGGTTGTGGATAGCAAGCCCAA TGACAGGATCTTCTTGTACTATTCTGATCATGGAGGTCCTGGAGTTCTTGGAATGCCAAATATGCCTTTTCTATATGCAATGGATTTCATCGAGGTTCTG AAGAAGAAACATGCATCTGGGAGCTACAAAGAAATGGTAATGTATATAGAAGCTTGCGAGAGTGGGAGCATCTTCGAAGGGATCATGCCTAAGGACCTAA ACATTTACGTGACGACAGCATCAAATGCGGAAGAGATTAGCTGGGGAACTTATTGTCCTGGGATGGATCCATCTCCACCCTCGGAGTATGTCACTTGCTT AGGGGATCTGTACAGTGTTGCTTGGATGGAAGATAGTGAAACACACAATCTGAAGAAAGAAACAATTAAGCAGCAATATCATTCGGTGAAAGAGAGGACT TCCAATTACAATGCATTCACTTCTGGATCCCATGTGATGCAATATGGGAACGAAAGCCTCAAAGGAGAGAAGCTTTTTTTGTATCAAGGTTTCGATCCAG CTAGTGTAAACTTCCCTCCAAACAATGGCCACATTGGTGCGCGTATGGATGTTGTTAACCAGAGAGATGCAGAGCTTGTTTTCCTCTGGCAAATGTACAA AAGAGCTGAAGGTGGGTCAGAAAAGAAGACCCAAATCCTCAATCAGATTAAAGAGACAATGAGGCATAGAACTCACTTGGACAGCAGCATGGAATTGATC GGAACACTATTATTTGGACCTAAAAAAGGTTCCACCATCCTTAAATCTGTTAGGGAACCCGATTCGCCCCTAGTAGATGACTGGAGATGCTTAAAATCAA TGGTTCGATTGTTTGAAAAACATTGTGGATCACTGACTCAGTATGGAATGAAACACATGCGAGCATTTGCCAACATTTGCAATGGTGGCGTCTCTCTAGC CTCCATGGAGGAAGCTTGTGTGGCCGCTTGTAGTGGCCATGATGCTGGGGAACTGCATCCTTCAAACCAAGGTTACAGTACTTAA
AA sequence Show only first row Show all	>Potri.001G119800.1 pacid=42790499 polypeptide=Potri.001G119801.1.p locus=Potri.001G119800 ID=Potri.001G119800.1.v4.1 annot-version=v4.1 METHKAYFLSAILVLAMLSFLHVQSVQAARLNPVEPRILMPTGKDEPEVDDDGEEIGSRWAVLVAGSSGYGNYRHQADVCHAYQLLRKGGIKEENMVVFM YDDIAMHHLNPRPGVIINHPQGDDVYAGVPKDYTGEQVNTENLYAVLLGNKSAVKGGSGKVVDSKPNDRIFLYYSDHGGPGVLGMPNMPFLYAMDFIEVL KKKHASGSYKEMVMYIEACESGSIFEGIMPKDLNIYVTTASNAEEISWGTYCPGMDPSPPSEYVTCLGDLYSVAWMEDSETHNLKKETIKQQYHSVKERT SNYNAFTSGSHVMQYGNESLKGEKLFLYQGFDPASVNFPPNNGHIGARMDVVNQRDAELVFLWQMYKRAEGGSEKKTQILNQIKETMRHRTHLDSSMELI GTLLFGPKKGSTILKSVREPDSPLVDDWRCLKSMVRLFEKHCGSLTQYGMKHMRAFANICNGGVSLASMEEACVAACSGHDAGELHPSNQGYST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G62710		BETAVPE, BETA-V...	beta vacuolar processing enzym...		Potri.001G119800 [exp]	0	1
AT3G52060			Core-2/I-branching beta-1,6-N-...		Potri.008G018600 [exp]	2.44	0.7033
AT1G06650			2-oxoglutarate (2OG) and Fe(II...		Potri.010G073100 [exp]	5.91	0.6669
AT2G42070		ATNUDX23, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.006G192800 [exp]	7.07	0.6186
AT3G29130			unknown protein		Potri.011G098200 [exp]	8.24	0.6877
AT3G07580			unknown protein		Potri.014G172600 [exp]	11.22	0.6264
AT4G39870			TLD-domain containing nucleola...		Potri.007G092700 [exp]	17.74	0.5972
AT5G41700		ATUBC8, UBC8	ARABIDOPSIS THALIANA UBIQUITIN...		Potri.019G131400 [exp]	19.33	0.5889	UBC.10
AT5G18120		ATAPRL7	APR-like 7 (.1)		Potri.019G035700 [exp]	20.19	0.6120
AT5G05930		ATGC1	ARABIDOPSIS GUANYLYL CYCLASE 1...		Potri.008G062100 [exp]	22.04	0.5858
AT2G11890			adenylate cyclases (.1.2)		Potri.003G198200 [exp]	27.12	0.6272

Compare expression of checked genes

Potri.001G119800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.