Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12410 139 / 1e-42 SAUR-like auxin-responsive protein family (.1) AT4G22620 132 / 1e-39 SAUR-like auxin-responsive protein family (.1) AT2G45210 117 / 5e-34 SAUR-like auxin-responsive protein family (.1) AT3G60690 117 / 5e-34 SAUR-like auxin-responsive protein family (.1) AT2G46690 72 / 1e-16 SAUR-like auxin-responsive protein family (.1) AT4G38850 70 / 3e-16 SAUR-AC1, ATSAUR15, ATSR15AU, SAUR15, SAUR_AC1 SMALL AUXIN UP RNA 1 FROM ARABIDOPSIS THALIANA ECOTYPE COLUMBIA, ARABIDOPSIS COLUMBIA SAUR GENE 1, ARABIDOPSIS THALIANA SMALL AUXIN UPREGULATED 15, SAUR-like auxin-responsive protein family (.1) AT3G03820 70 / 4e-16 SAUR-like auxin-responsive protein family (.1) AT4G34760 69 / 1e-15 SAUR-like auxin-responsive protein family (.1) AT5G53590 69 / 4e-15 SAUR-like auxin-responsive protein family (.1) AT2G21220 67 / 6e-15 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G113100 [exp] 271 / 2e-94 AT4G12410 149 / 1e-46 SAUR-like auxin-responsive protein family (.1) Potri.014G066900 [exp] 147 / 2e-45 AT3G60690 191 / 9e-63 SAUR-like auxin-responsive protein family (.1) Potri.002G145300 [exp] 135 / 8e-41 AT3G60690 174 / 4e-56 SAUR-like auxin-responsive protein family (.1) Potri.009G127400 [exp] 71 / 3e-16 AT4G34770 111 / 3e-33 SAUR-like auxin-responsive protein family (.1) Potri.014G103300 [exp] 69 / 1e-15 AT2G46690 152 / 2e-49 SAUR-like auxin-responsive protein family (.1) Potri.004G164400 [exp] 69 / 1e-15 AT4G34760 182 / 4e-61 SAUR-like auxin-responsive protein family (.1) Potri.002G176400 [exp] 69 / 2e-15 AT2G46690 145 / 2e-46 SAUR-like auxin-responsive protein family (.1) Potri.009G126000 [exp] 67 / 4e-15 AT4G34760 179 / 4e-60 SAUR-like auxin-responsive protein family (.1) Potri.008G037900 [exp] 67 / 7e-15 AT2G37030 103 / 2e-29 SAUR-like auxin-responsive protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024600 [exp] 122 / 2e-35 AT4G12410 149 / 3e-46 SAUR-like auxin-responsive protein family (.1) Lus10015879 [exp] 114 / 2e-32 AT3G60690 151 / 7e-47 SAUR-like auxin-responsive protein family (.1) Lus10009286 [exp] 114 / 2e-32 AT3G60690 150 / 2e-46 SAUR-like auxin-responsive protein family (.1) Lus10032237 [exp] 113 / 3e-32 AT4G12410 149 / 2e-46 SAUR-like auxin-responsive protein family (.1) Lus10004337 [exp] 103 / 1e-28 AT4G12410 110 / 2e-31 SAUR-like auxin-responsive protein family (.1) Lus10030295 [exp] 98 / 2e-26 AT2G45210 131 / 1e-39 SAUR-like auxin-responsive protein family (.1) Lus10028920 [exp] 94 / 2e-25 AT4G12410 106 / 1e-30 SAUR-like auxin-responsive protein family (.1) Lus10010110 [exp] 71 / 2e-16 AT2G46690 124 / 1e-37 SAUR-like auxin-responsive protein family (.1) Lus10007560 [exp] 69 / 1e-15 AT4G34770 139 / 3e-44 SAUR-like auxin-responsive protein family (.1) Lus10012185 [exp] 68 / 2e-15 AT4G34770 139 / 3e-44 SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [poplar] [flax] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Potri.001G119900.1 pacid=42790982 polypeptide=Potri.001G119900.1.p locus=Potri.001G119900 ID=Potri.001G119900.1.v4.1 annot-version=v4.1 ATGATCAAGAGAATTAGAGGGTTCAGGCTTGGACGCAAGAAACTAGCAAGATTCTTCAAATGGATTGCCCAACGCAGAAGAGAACCAGCTCGTTTGTGCT CCAGGGACCACCCAAGAAGGCCCTGCAATTCCATTTCCAAAATCTTGGACATGGCTCGATATTTTACACGTGGAGCTAAAACTCTCTGTTTTCCAAATTC GGATCCGGGTTATATCAAATTGGGTCATGCGAAACCAATGGAGGTACCCAAAGGACACTTGGCTGTGTACGTGGGCGAATCAGATGGAGACACGAGGAGG GAATTGGTGCCTGTCATTTTCTTCAATCACCCTCTCTTTGCAGAGCTATTACAGAGAACGGAGCGGGTAAACGGGTATAATCATTCGGGTGGGATTACTA TACCGTGTGGGTATTCGGAGTTTGAGAAGGTAAAGACGAGGATTGCCGCCTGGGAAAATTGCCATAATAGTATATGGACGAGGCATTATAAGTATTGGTG A
AA sequence Show only first row Show all	>Potri.001G119900.1 pacid=42790982 polypeptide=Potri.001G119900.1.p locus=Potri.001G119900 ID=Potri.001G119900.1.v4.1 annot-version=v4.1 MIKRIRGFRLGRKKLARFFKWIAQRRREPARLCSRDHPRRPCNSISKILDMARYFTRGAKTLCFPNSDPGYIKLGHAKPMEVPKGHLAVYVGESDGDTRR ELVPVIFFNHPLFAELLQRTERVNGYNHSGGITIPCGYSEFEKVKTRIAAWENCHNSIWTRHYKYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12410			SAUR-like auxin-responsive pro...		Potri.001G119900 [exp]	0	1
AT1G21550			Calcium-binding EF-hand family...		Potri.002G077300 [exp]	9.11	0.9715
AT3G11920			glutaredoxin-related (.1)		Potri.010G097600 [exp]	11.31	0.9286
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.017G003800 [exp]	12.48	0.9704
					Potri.017G003866 [exp]	20.49	0.9685
AT1G68040			S-adenosyl-L-methionine-depend...		Potri.019G016102 [exp]	22.18	0.9669
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.017G003251 [exp]	27.49	0.9667
AT4G11480		CRK32	cysteine-rich RLK (RECEPTOR-li...		Potri.017G005500 [exp]	28.46	0.9644
AT2G46150			Late embryogenesis abundant (L...		Potri.001G098100 [exp]	29.22	0.9628
AT4G39830			Cupredoxin superfamily protein...		Potri.005G079400 [exp]	29.93	0.9627	Pt-AO1.3
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.017G004400 [exp]	32.12	0.9659

Compare expression of checked genes

Potri.001G119900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.