Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	NAC038
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12260 456 / 8e-161 NAC ANAC007, VND4, EMB2749 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) AT1G62700 404 / 3e-140 NAC ANAC026, VND5 VASCULAR RELATED NAC-DOMAIN PROTEIN 5, Arabidopsis NAC domain containing protein 26 (.1) AT4G36160 326 / 4e-110 NAC ANAC076, VND2 VASCULAR-RELATED NAC-DOMAIN 2, NAC domain containing protein 76 (.1) AT2G18060 325 / 5e-110 NAC ANAC037, VND1 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) AT5G62380 305 / 3e-102 NAC ANAC101, VND6 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) AT5G66300 294 / 1e-98 NAC ANAC105, VND3 VASCULAR-RELATED NAC-DOMAIN 3, Arabidopsis NAC domain containing protein 105, NAC domain containing protein 105 (.1) AT2G46770 272 / 3e-89 NAC NST1, ANAC043, EMB2301 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT1G71930 263 / 3e-86 NAC VND7, ANAC030 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) AT3G61910 258 / 4e-84 NAC NST2, ANAC066 NAC SECONDARY WALL THICKENING PROMOTING FACTOR2, NAC domain protein 66 (.1) AT4G10350 248 / 6e-80 NAC BRN2, NST4, ANAC070 BEARSKIN 2, NAC domain containing protein 70 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G113000 [exp] 678 / 0 AT1G12260 439 / 3e-154 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Potri.012G126500 [exp] 518 / 0 AT1G12260 348 / 3e-118 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Potri.015G127400 [exp] 515 / 0 AT1G12260 378 / 4e-130 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Potri.007G014400 [exp] 349 / 5e-119 AT2G18060 427 / 1e-149 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) Potri.005G116800 [exp] 332 / 2e-112 AT2G18060 441 / 2e-155 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) Potri.019G083600 [exp] 280 / 7e-93 AT1G71930 320 / 4e-109 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Potri.013G113100 [exp] 276 / 2e-91 AT1G71930 309 / 1e-104 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Potri.014G104800 [exp] 265 / 4e-86 AT2G46770 380 / 3e-131 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.001G448400 [exp] 263 / 6e-85 AT1G32770 295 / 4e-97 SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC domain containing protein 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032238 [exp] 460 / 2e-162 AT1G12260 432 / 6e-151 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Lus10024601 [exp] 459 / 3e-162 AT1G12260 436 / 3e-152 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Lus10031142 [exp] 352 / 5e-121 AT1G12260 351 / 4e-120 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Lus10031721 [exp] 348 / 1e-119 AT1G12260 353 / 4e-121 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Lus10004338 [exp] 314 / 5e-106 AT1G62700 302 / 7e-101 VASCULAR RELATED NAC-DOMAIN PROTEIN 5, Arabidopsis NAC domain containing protein 26 (.1) Lus10041822 [exp] 288 / 2e-95 AT2G18060 352 / 3e-120 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) Lus10028372 [exp] 288 / 3e-95 AT2G18060 349 / 4e-119 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) Lus10017915 [exp] 269 / 9e-89 AT1G71930 314 / 4e-107 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Lus10002687 [exp] 254 / 3e-81 AT2G46770 358 / 1e-121 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10017340 [exp] 251 / 1e-80 AT2G46770 347 / 7e-118 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.001G120000.3 pacid=42790406 polypeptide=Potri.001G120000.3.p locus=Potri.001G120000 ID=Potri.001G120000.3.v4.1 annot-version=v4.1 ATGAATACCTTCTCGCATGTCCCCCCGGGCTTTAGATTCCATCCAACAGATGAAGAACTTGTTGATTACTACCTTAGGAAAAAAGTCGCTTCAAAAAGAA TTGACCTCGATGTCATTAAGGATGTTGATCTCTATAAAATTGAACCATGGGATCTTCAAGAATTGTGCAAACTCGGGACTGAAGATCAAAATGAATGGTA CTTCTTCAGCCATAAAGATAAGAAGTATCCTACTGGAACTCGCACTAATAGAGCGACAAAAGCTGGGTTTTGGAAAGCTACTGGAAGAGACAAGGCTATC TACTCTAGGCATAGCTTGGTTGGCATGAGAAAAACCCTAGTGTTTTACAAAGGACGAGCTCCAAATGGACAAAAGTCAGATTGGATCATGCATGAATATC GACTAGAAACAAATGAAAATGGAATCCCCCAGGAAGAAGGATGGGTTGTCTGTAGGGTGTTCAAGAAGCGAATGCCGACAATGAGAAAAGTTGGTGACTA TGACTCACCATGTTGGTATGATGACCAGGTTTCATTCATGCCAGAAATTGATTCTCCAAGGCGAATATCTCAACCTTACGCACCATACCATCATCACTAT CATTGCAAGCAAGAACTTGAGTTGCAATACAATATGCCTCATGACCCTTTCCTCCAGCTTCCTCAATTAGAAAGCCCAAAAGTTCCACAATCAGCAGCAA CTGCGAGTTGTAATTCAGTTATTGCATATGGTTTTGACAGGACCAATGGGAACACCTTGCAGTCATCTACCCTTACACAAGAAGAAAAAATGCAGCAATG TCATCAACAAAATTTAAACTCACTTCACAATAACAATAATAGTGAGCAAGCTGTAGACCAAGTGACTGATTGGCGAGTCCTTGACAAATTTGTTGCTTCC CAGTTAAGCCATGAGGATGCCTCCAAGGGAACCAATAACTTCTCCAGTACAGCCACCTTTAATGCAGCCGAGCAGATGAACATGCTTGCCAACGAATCCA AAAGGTCAGAAATTGCACAGCAATATGCCTCGACGTCTACGTCAAGTTGCCAAATTGATCTATGGAAGTGA
AA sequence Show only first row Show all	>Potri.001G120000.3 pacid=42790406 polypeptide=Potri.001G120000.3.p locus=Potri.001G120000 ID=Potri.001G120000.3.v4.1 annot-version=v4.1 MNTFSHVPPGFRFHPTDEELVDYYLRKKVASKRIDLDVIKDVDLYKIEPWDLQELCKLGTEDQNEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAI YSRHSLVGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNENGIPQEEGWVVCRVFKKRMPTMRKVGDYDSPCWYDDQVSFMPEIDSPRRISQPYAPYHHHY HCKQELELQYNMPHDPFLQLPQLESPKVPQSAATASCNSVIAYGFDRTNGNTLQSSTLTQEEKMQQCHQQNLNSLHNNNNSEQAVDQVTDWRVLDKFVAS QLSHEDASKGTNNFSSTATFNAAEQMNMLANESKRSEIAQQYASTSTSSCQIDLWK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Potri.001G120000 [exp]	0	1	NAC038
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Potri.015G127400 [exp]	1.00	0.8426
AT5G57670			Protein kinase superfamily pro...		Potri.018G096100 [exp]	3.16	0.7998
AT4G24580		REN1	ROP1 ENHANCER 1, Rho GTPase ac...		Potri.005G157400 [exp]	8.24	0.7795
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Potri.013G086600 [exp]	8.66	0.7778
AT1G76620			Protein of unknown function, D...		Potri.002G001900 [exp]	14.24	0.7561
AT1G79620			Leucine-rich repeat protein ki...		Potri.016G144100 [exp]	16.43	0.7992
AT1G20670			DNA-binding bromodomain-contai...		Potri.006G112000 [exp]	20.71	0.7414	BRD919
AT4G10550			Subtilase family protein (.1.2...		Potri.011G146300 [exp]	25.09	0.7316
AT5G13000		CALS3, ATGSL12	callose synthase 3, glucan syn...		Potri.003G214200 [exp]	27.60	0.7703	CALS1.4
AT1G68795		CLE12	CLAVATA3/ESR-RELATED 12 (.1)		Potri.010G130400 [exp]	33.76	0.7292	CLE12.1

Compare expression of checked genes

Potri.001G120000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.