Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12230 557 / 0 Aldolase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032243 [exp] 570 / 0 AT1G12230 547 / 0.0 Aldolase superfamily protein (.1.2) Lus10024606 [exp] 569 / 0 AT1G12230 553 / 0.0 Aldolase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [poplar] [flax] TIM_barrel PF00923 [poplar] [flax] TAL_FSA Transaldolase/Fructose-6-phosphate aldolase
Representative CDS sequence Show only first row Show all	>Potri.001G120400.1 pacid=42791249 polypeptide=Potri.001G120400.1.p locus=Potri.001G120400 ID=Potri.001G120400.1.v4.1 annot-version=v4.1 ATGTCACTCTCCTTGCAATCTCCGCTCTCTTCTGCTCTATCCTCCAAATCCTCCTTCCTCCAGAAAGGAGGAGGAGGAGGGAGACTGAGGTTACTCAGTG GATCACCATCTTCAAATGCTATTTTTTTCAAGCTCCATAACCCTTCATTTCCTCAAATTCGTGCTTCTTCTCTTGATGCTGGTGCTAGCACTGAATTGGA TGCTGTGTCTAGCTTGAGTGAGATCGTGCCTGATACTGTCGTTTTCGATGATTTCCAGAAGTTTCCTCCAACTGCTGCCACTGTTAGCTCTTCACTTCTT TTGGGTATCTGTAGCCTGCCCGATACAATATTCAGAAGTGCTGTGGACACCGCATTGGCGGATTCAGGGTGTTCTTCTCTTGAAAACGATGTGCTGAGAT TGTCTTGTTTCGCTAACAAGGCTTTGGTGAATGTTGGAGGTGATTTATCTAAATTGGTACCCGGCCGAGTTTCAACTGAAGTGGATGCGCGGTTGGCTTA TGACACCCATGGCATTATTAGAAAGGTGCATGACTTGTTGAAGTCATACGGTGAAATTGATGTTCCTCCTGAGCGATTGTTATTCAAAATTCCAGCAACT TGGCAAGGAATAGAAGCCTCGAGATTGTTGGAGTCTGAGGGCATACAGACGCATTTGACTTTTGTTTACAGCTTTGTTCAAGCCGCCGCCGCCGCTCAAG CTGGTGCTTCTGTTATTCAGATTTTTGTGGGACGCCTTAGGGATTGGTCGCGGAACCATTCTGGTGACCCTGAGATTGAAGCTGCTCTGAAAAGAGGAGA GGATCCTGGGTTGGCACTGGTGACAAAGGCTTACAATTACATCCACAAATATGGGTATAAATCGAAGTTGATGGCTGCTGCAGTTCGCAACAAACAAGAT TTATTCAGTCTCTTGGGGGTTGACTATATCATTGCACCATTGAAAGTAATGCAATCTCTGAAAGAGTCTTTAACCACTCCTGATGAGAAGTACTCTTTTG TTCGGAGGTTATCACCACATTCTGCTGCTGCTTACAGTTTCAGTGAAGAAGAGCTTATTAAATGGGATCAATTAAGCCTTGCATCAGCAATGGGGCCTGC ATCTGTGGAGCTTCTGGCTGCTGGATTGGATGGTTATGTTAATCAAGCAAAGCGAGTTGAGGAGTTATTTGCCAAGATTTGGCCTCCCCCAAATGTATAA
AA sequence Show only first row Show all	>Potri.001G120400.1 pacid=42791249 polypeptide=Potri.001G120400.1.p locus=Potri.001G120400 ID=Potri.001G120400.1.v4.1 annot-version=v4.1 MSLSLQSPLSSALSSKSSFLQKGGGGGRLRLLSGSPSSNAIFFKLHNPSFPQIRASSLDAGASTELDAVSSLSEIVPDTVVFDDFQKFPPTAATVSSSLL LGICSLPDTIFRSAVDTALADSGCSSLENDVLRLSCFANKALVNVGGDLSKLVPGRVSTEVDARLAYDTHGIIRKVHDLLKSYGEIDVPPERLLFKIPAT WQGIEASRLLESEGIQTHLTFVYSFVQAAAAAQAGASVIQIFVGRLRDWSRNHSGDPEIEAALKRGEDPGLALVTKAYNYIHKYGYKSKLMAAAVRNKQD LFSLLGVDYIIAPLKVMQSLKESLTTPDEKYSFVRRLSPHSAAAYSFSEEELIKWDQLSLASAMGPASVELLAAGLDGYVNQAKRVEELFAKIWPPPNV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12230			Aldolase superfamily protein (...		Potri.001G120400 [exp]	0	1
AT1G31850			S-adenosyl-L-methionine-depend...		Potri.003G102400 [exp]	3.46	0.8362
AT1G60160			Potassium transporter family p...		Potri.008G147300 [exp]	5.00	0.8081
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Potri.017G081100 [exp]	6.00	0.8316
AT5G26910			unknown protein		Potri.005G019700 [exp]	6.92	0.8028
AT3G03890			FMN binding (.1.2)		Potri.013G057700 [exp]	15.71	0.7738
AT1G80500			SNARE-like superfamily protein...		Potri.001G043400 [exp]	16.49	0.7760
AT5G38630		ACYB-1	cytochrome B561-1 (.1)		Potri.008G115300 [exp]	16.58	0.7695
AT1G33265			Transmembrane proteins 14C (.1...		Potri.011G147000 [exp]	16.91	0.7958
AT2G22140		ATEME1B	essential meiotic endonuclease...		Potri.007G077400 [exp]	20.14	0.7340
AT1G67400			ELMO/CED-12 family protein (.1...		Potri.008G175301 [exp]	21.56	0.7204

Compare expression of checked genes

Potri.001G120400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.