Plant FIBer expression Database

Potri.001G120700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G22600 228 / 4e-74 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028923
[exp]
243 / 5e-80 AT4G22600 221 / 3e-71 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF14144 DOG1 Seed dormancy control
Representative CDS sequence
>Potri.001G120700.3 pacid=42793414 polypeptide=Potri.001G120700.3.p locus=Potri.001G120700 ID=Potri.001G120700.3.v4.1 annot-version=v4.1
ATGCCAAGCCCCTTCTCTATCTTTTCTCGCAGCAACACCACCAAACAAACACCTATCCCATTCAAAGACTACTACACAAACTGGTTCAACACTCTCAAGA
ACACACTCCTCCCTCTCCTCCATCATTCCCTTTCCAGCTCTCCTTCCTCTCCCACTCTCCTCTCCTCTCACCTCCACCTCATCCTCCACCACCTCCTCTC
TTACTACGAGTCTCTTGACCTTGCTGCCACCACCAATACCAAGAATCTTCCTTACCTTCTTTACCCTTCTTGGAGAAACCCCCTTGAAACACCCTTCTTG
TTTCTCGGTGATCTTCACCCTTACGTTTTCACTAACCTCCTCAGGTCATTTCTTGATGAAGCAGACAGTGATGAAGACACCGAAAATGACCGTAAAGTTT
TTGTCTTTGATAGGCCTTGTCATGTGGTGATGGCATGGAAAGACCCTTCAAAGCATTTGATGATCAAGATTGAGCAAATTGAGCGTGGACTAAGGTTAAT
GGTACCTGCACTTCTTGATAGAGTGAAAACAGCCCAGTCAGGATTTGCAGGGAAGATTGCAGAAGAATGGGTGAATTGTGAGAGAAAGGAGAAAATGGAT
GTTAGTGAGGCAATGAAGGCTGAAATGGAGGAGTTAGTGACTGTGTTTTTGCATGCTAATAGGTTAAGAAGAAGTGTGATATCAGATATTGTTGCTGCAC
TGAATGTTTATCAGGGGGCTTTGTTTCTTGATGGATTAGCCCAATTTCTTGTTGGGTTTCAGGACAAGAATTTGCTCCGTGAATTCGAAAGATGCAAGAC
TCCTATCAGTGAAAGAGTTTGCCTCTGA
AA sequence
>Potri.001G120700.3 pacid=42793414 polypeptide=Potri.001G120700.3.p locus=Potri.001G120700 ID=Potri.001G120700.3.v4.1 annot-version=v4.1
MPSPFSIFSRSNTTKQTPIPFKDYYTNWFNTLKNTLLPLLHHSLSSSPSSPTLLSSHLHLILHHLLSYYESLDLAATTNTKNLPYLLYPSWRNPLETPFL
FLGDLHPYVFTNLLRSFLDEADSDEDTENDRKVFVFDRPCHVVMAWKDPSKHLMIKIEQIERGLRLMVPALLDRVKTAQSGFAGKIAEEWVNCERKEKMD
VSEAMKAEMEELVTVFLHANRLRRSVISDIVAALNVYQGALFLDGLAQFLVGFQDKNLLREFERCKTPISERVCL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G22600 unknown protein Potri.001G120700
[exp]
0 1
AT1G20720 RAD3-like DNA-binding helicase... Potri.002G008700
[exp]
2.64 0.8247
Potri.003G025350
[exp]
6.63 0.7955
AT1G49960 Xanthine/uracil permease famil... Potri.001G292600
[exp]
9.59 0.8239
AT2G19520 ATMSI4, ACG1, N... MULTICOPY SUPPRESSOR OF IRA1 4... Potri.003G038800
[exp]
9.79 0.8155 Pt-ATMSI4.2,NFC907
AT4G10890 unknown protein Potri.007G058050
[exp]
14.49 0.7529
AT4G34160 CYCD3;1 CYCLIN D3;1 (.1) Potri.014G023000
[exp]
23.43 0.7978 CYCD1.4
AT2G39750 S-adenosyl-L-methionine-depend... Potri.008G059500
[exp]
25.39 0.7844
AT1G77260 S-adenosyl-L-methionine-depend... Potri.002G077100
[exp]
25.45 0.8159
AT3G24495 ATMSH7, MSH7, M... MUTS HOMOLOG 6-2, ARABIDOPSIS ... Potri.006G159200
[exp]
26.45 0.8075
AT3G24495 ATMSH7, MSH7, M... MUTS HOMOLOG 6-2, ARABIDOPSIS ... Potri.006G156314
[exp]
28.63 0.8100

Potri.001G120700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.