Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22580 593 / 0 Exostosin family protein (.1) AT2G29040 292 / 2e-91 Exostosin family protein (.1) AT4G13990 285 / 6e-91 Exostosin family protein (.1) AT2G32750 271 / 2e-85 Exostosin family protein (.1) AT2G20370 271 / 3e-84 AtMUR3, MUR3, KAM1 MURUS 3, KATAMARI 1, Exostosin family protein (.1) AT2G31990 259 / 3e-81 Exostosin family protein (.1) AT2G32740 258 / 5e-81 ATGT13 ARABIDOPSIS GALACTOSYLTRANSFERASE 13, galactosyltransferase 13 (.1) AT5G62220 247 / 2e-76 ATGT18 glycosyltransferase 18 (.1) AT5G41250 246 / 2e-75 Exostosin family protein (.1) AT1G63450 242 / 5e-73 RHS8 root hair specific 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G112200 [exp] 801 / 0 AT4G22580 583 / 0.0 Exostosin family protein (.1) Potri.014G147800 [exp] 288 / 9e-92 AT4G13990 534 / 0.0 Exostosin family protein (.1) Potri.009G032500 [exp] 291 / 1e-91 AT2G29040 588 / 0.0 Exostosin family protein (.1) Potri.001G321000 [exp] 270 / 1e-84 AT4G13990 660 / 0.0 Exostosin family protein (.1) Potri.002G256200 [exp] 270 / 3e-84 AT2G20370 964 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Potri.012G130700 [exp] 241 / 5e-74 AT5G62220 626 / 0.0 glycosyltransferase 18 (.1) Potri.001G105300 [exp] 241 / 2e-73 AT1G63450 653 / 0.0 root hair specific 8 (.1) Potri.015G132600 [exp] 236 / 5e-72 AT5G62220 619 / 0.0 glycosyltransferase 18 (.1) Potri.001G382200 [exp] 232 / 6e-71 AT1G68470 530 / 0.0 Exostosin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028924 [exp] 651 / 0 AT4G22580 575 / 0.0 Exostosin family protein (.1) Lus10004341 [exp] 647 / 0 AT4G22580 567 / 0.0 Exostosin family protein (.1) Lus10016532 [exp] 285 / 8e-91 AT2G29040 546 / 0.0 Exostosin family protein (.1) Lus10006694 [exp] 283 / 2e-89 AT4G13990 617 / 0.0 Exostosin family protein (.1) Lus10001028 [exp] 280 / 1e-88 AT4G13990 499 / 1e-173 Exostosin family protein (.1) Lus10010677 [exp] 279 / 1e-88 AT2G32750 497 / 7e-173 Exostosin family protein (.1) Lus10007426 [exp] 277 / 7e-88 AT2G32750 505 / 5e-176 Exostosin family protein (.1) Lus10004967 [exp] 278 / 3e-87 AT2G29040 573 / 0.0 Exostosin family protein (.1) Lus10024961 [exp] 276 / 2e-86 AT2G20370 959 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10022862 [exp] 272 / 1e-84 AT2G20370 951 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [poplar] [flax] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Potri.001G120800.1 pacid=42790723 polypeptide=Potri.001G120800.1.p locus=Potri.001G120800 ID=Potri.001G120800.1.v4.1 annot-version=v4.1 ATGGCCTGCAAAACCACTTCTTTCTTATGCTTCTGCCTCCTTCTCATCTCCATTGATTCAATCATTTCTCAGGACATAACAGACACAGAAAGAGGCTGCA GTAACCGTTGGATCCACGTCAGAAGTTTGCCGCCAAGGTTCAATCTTGATCTCCTTGCAAACTGTTCTGAATACCCACTTTTTAACAATTTCTGTCCTTA CCTTGCAAACCATGGTTTAGGGCCCAGAACACACAACAAGTCTCAATCTTGGTATCGTACAAACCCTTTGTTGTTGGAACTTATATTCCACCATAGGATG CTTGAATACCCTTGTTTAACATCAGATCCCAATCAAGCCAATGCCATCTACTTACCTTACTATGCAGCAATTGATGCTTTGAGGTATCTATATGGTCCTG AAGTGAATAGCAGCATGGAACATGGGCTTGAATTGTATGATTATTTACAAGACAATGAAGGTTGGATATGGTCAAGGAATCATGGGGCTGATCATTTCTT GGTCATGTCAAGGCCTGCCTGGGATTTCTCTCAATCTGTAGATGTTGATCCTCCTATTTGGGGTACTTCATTTCTTGAATTGCCAGAGTTTTATAATGTT ACTGTTTTGATTGTTGAAGGAAGGGCTTGGCCTTGGCAAGAACAGGCTGTGCCCTATTTGACATCATTTCACCCTCCAAATTTAGGATTTCTTGAGTCTT GGATTAAACGCGTTAAGGCGTCGAGAAGGACGACTTTGATGCTTTTTGCAGGTGGGGGTGGTGTTGGTTCCACTCCAAATATCAGGAGGAGTATCAGGAA TGAATGCGAAAGCAGCAGCTTTAGCAGCAGTAGTGACATTTATGTCAATAATGTCGAAGGGTTCGATTACCCGAAGATGAGGAAAGTTTGTGATATAGTG GATTGCTCCAACGGGATATGTGAGCATGATCCAATAAGGTATATGAGGCCGATGCTACAAGCAACATTTTGTTTGCAGCCTCCAGGGGACACACCAACTA GGAGGTCGACTTTTGATGGGATTATTGCTGGGTGTATACCAGTTTTCTTTGAAGAACAATCTGCGAAGTCACAATATGGTTGGCATTTGCCAGAGGAAAT GTATAGAGACTTCGCTGTGTTTATACCAAAGGAGGATGTTGTGTTTAAAGGGTTGAGGATTTTGGATGTGTTGACAGGGATACCGAGAAATGAAGTCCGG AGGATGAGGGAGAGAGTTATAGAATTGATACCAAGAGTTTTGTACAGGAAGCATGGGAGTTCATCCGGTTTAAGAGCTAGAAAGGATGCCTTTGACATTG CAGTTGAAGGTGCTTTGCAGAGGATCAATTCTAGGTTGAAAGCAAGGGACTTTGATCAATGA
AA sequence Show only first row Show all	>Potri.001G120800.1 pacid=42790723 polypeptide=Potri.001G120800.1.p locus=Potri.001G120800 ID=Potri.001G120800.1.v4.1 annot-version=v4.1 MACKTTSFLCFCLLLISIDSIISQDITDTERGCSNRWIHVRSLPPRFNLDLLANCSEYPLFNNFCPYLANHGLGPRTHNKSQSWYRTNPLLLELIFHHRM LEYPCLTSDPNQANAIYLPYYAAIDALRYLYGPEVNSSMEHGLELYDYLQDNEGWIWSRNHGADHFLVMSRPAWDFSQSVDVDPPIWGTSFLELPEFYNV TVLIVEGRAWPWQEQAVPYLTSFHPPNLGFLESWIKRVKASRRTTLMLFAGGGGVGSTPNIRRSIRNECESSSFSSSSDIYVNNVEGFDYPKMRKVCDIV DCSNGICEHDPIRYMRPMLQATFCLQPPGDTPTRRSTFDGIIAGCIPVFFEEQSAKSQYGWHLPEEMYRDFAVFIPKEDVVFKGLRILDVLTGIPRNEVR RMRERVIELIPRVLYRKHGSSSGLRARKDAFDIAVEGALQRINSRLKARDFDQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22580			Exostosin family protein (.1)		Potri.001G120800 [exp]	0	1
AT3G46550		FLA4, SOS5	salt overly sensitive 5, fasci...		Potri.006G174900 [exp]	3.16	0.6392
AT4G15800		RALFL33	ralf-like 33 (.1)		Potri.013G017400 [exp]	8.36	0.6830	Pt-RALFL23.3
AT3G16300			Uncharacterised protein family...		Potri.003G050400 [exp]	9.48	0.6906
AT4G25780			CAP (Cysteine-rich secretory p...		Potri.018G096028 [exp]	10.24	0.6364
AT3G10200			S-adenosyl-L-methionine-depend...		Potri.006G043600 [exp]	13.26	0.6551
AT3G06600			unknown protein		Potri.008G103600 [exp]	27.00	0.6206
AT4G09720		AtRABG3a	RAB GTPase homolog G3A (.1.2.3...		Potri.005G198800 [exp]	27.56	0.6205	RAB7.1
AT3G07470			Protein of unknown function, D...		Potri.014G177800 [exp]	32.20	0.6035
AT2G20810		GAUT10, LGT4	galacturonosyltransferase 10 (...		Potri.019G108900 [exp]	33.04	0.6010
AT2G43070		ATSPPL3	ARABIDOPSIS THALIANA SIGNAL PE...		Potri.014G150000 [exp]	39.34	0.5760

Compare expression of checked genes

Potri.001G120800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.