Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-KAS.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62640 632 / 0 KAS III, KASIII 3-ketoacyl-acyl carrier protein synthase III (.1.2) AT1G71160 42 / 0.0008 KCS7 3-ketoacyl-CoA synthase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G112101 [exp] 139 / 2e-39 AT1G62640 132 / 4e-37 3-ketoacyl-acyl carrier protein synthase III (.1.2) Potri.001G051500 [exp] 50 / 2e-06 AT5G13930 692 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.001G051600 [exp] 49 / 3e-06 AT5G13930 692 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.014G145100 [exp] 45 / 4e-05 AT5G13930 679 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176800 [exp] 44 / 0.0002 AT5G13930 693 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176900 [exp] 44 / 0.0002 AT5G13930 694 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028925 [exp] 622 / 0 AT1G62640 592 / 0.0 3-ketoacyl-acyl carrier protein synthase III (.1.2) Lus10004342 [exp] 615 / 0 AT1G62640 582 / 0.0 3-ketoacyl-acyl carrier protein synthase III (.1.2) Lus10024608 [exp] 608 / 0 AT1G62640 585 / 0.0 3-ketoacyl-acyl carrier protein synthase III (.1.2) Lus10032246 [exp] 594 / 0 AT1G62640 581 / 0.0 3-ketoacyl-acyl carrier protein synthase III (.1.2) Lus10020662 [exp] 44 / 0.0002 AT1G71160 470 / 6e-164 3-ketoacyl-CoA synthase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [poplar] [flax] Thiolase PF02797 [poplar] [flax] Chal_sti_synt_C Chalcone and stilbene synthases, C-terminal domain CL0046 [poplar] [flax] Thiolase PF08545 [poplar] [flax] ACP_syn_III 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
Representative CDS sequence Show only first row Show all	>Potri.001G120900.1 pacid=42788434 polypeptide=Potri.001G120900.1.p locus=Potri.001G120900 ID=Potri.001G120900.1.v4.1 annot-version=v4.1 ATGGCAAATGCATCTGGGTTCTTTAGTCCTTCAGTTCCAAGCCTCAGAGGGAAGATTAAGCCTTCAATAGGGGTTATTGGATCTGGGATTTGGTCCACTC AAAGAATCTCAAAGAGAGTGGTGTGTTCCGGCACCATTGAAGGCTCAGAGAAGATTTCCTCTTCTCAATCTCAACTGCCAAGGCTTGTCAGTCAAGGCTG CAAATTAGTTGGATGTGGCTCAGCATTACCAAGTCTTCAGATTTCAAACGATGACCTTGCAAAAATAGTTGATACTTCTGATGAATGGATATCTGTTCGC ACTGGCATTCGTAATAGACGAGTTATTACAGGAAAAGATAGCTTGATTACTCTATCAGCAGAGGCAGCAAGTAAAGCTCTTCAGATGGCAGGGGTTGACC CTGATGATTTGGACCTAGTCTTGATGTGCACTTCTACGCCAGAAGATCTTTTTGGTAGTGCTCCTCAGGTCCAAAAAGCTCTGGGCTGCAAAACAAATCC CTTGGCTTATGATATTACAGCTGCTTGTAGTGGATTTGTGCTTGGTCTAGTCTCCGCTGCTTGTCACATTAGGGGAGGTGGGTTTAAGAATGTATTGGTT ATTGGTGCTGATACACTTTCTCGGTATGTTGACTGGACGGATAGAGGAACTTGTATTCTCTTTGGGGATGCTGCTGGTGCTGTAGTCGTACAGGCCTGTG ATATTGAGGATGATGGTCTTTTTAGTTTTGACGTGAACAGCGATGGCGAAGGTGGAAGACATTTAAACGCCTCCATCAAAGATAATGAAGTTGATCATGC AGTGGGTTCTAATGGCTCAGTTTTAGACTTTCCTCCAAAACGCCATGCCAACTTTTCCTGCATTCACATGAATGGAAAAGAGGTTTTCCGCTTTGCTGTT AGATGTGTGCCCCAGTCTATAGAGTCTGCTCTTGGAAAGGCTGGTCTCACTGGTTCGAGCATCGACTGGTTACTGCTCCACCAGGCAAATCAAAGGATCA TTGATGCAGTGGCAACCCGCTTAGAAGTCCCGCCGGAAAGGATCATATCAAATTTGGCTAATTATGGTAACACGAGTGCTGCTTCTATTCCATTGGCATT GGATGAAGCTGTCAGAAGTGGGAAGGTGAAATCAGGCCATACTATTGCAACTGCAGGCTTTGGAGCCGGTTTAACTTGGGGTTCTGCAATCATTAGATGG GGGTGA
AA sequence Show only first row Show all	>Potri.001G120900.1 pacid=42788434 polypeptide=Potri.001G120900.1.p locus=Potri.001G120900 ID=Potri.001G120900.1.v4.1 annot-version=v4.1 MANASGFFSPSVPSLRGKIKPSIGVIGSGIWSTQRISKRVVCSGTIEGSEKISSSQSQLPRLVSQGCKLVGCGSALPSLQISNDDLAKIVDTSDEWISVR TGIRNRRVITGKDSLITLSAEAASKALQMAGVDPDDLDLVLMCTSTPEDLFGSAPQVQKALGCKTNPLAYDITAACSGFVLGLVSAACHIRGGGFKNVLV IGADTLSRYVDWTDRGTCILFGDAAGAVVVQACDIEDDGLFSFDVNSDGEGGRHLNASIKDNEVDHAVGSNGSVLDFPPKRHANFSCIHMNGKEVFRFAV RCVPQSIESALGKAGLTGSSIDWLLLHQANQRIIDAVATRLEVPPERIISNLANYGNTSAASIPLALDEAVRSGKVKSGHTIATAGFGAGLTWGSAIIRW G

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G62640		KAS III, KASIII	3-ketoacyl-acyl carrier protei...		Potri.001G120900 [exp]	0	1	Pt-KAS.2
AT1G72480			Lung seven transmembrane recep...		Potri.003G068500 [exp]	2.23	0.8934
AT5G35160			Endomembrane protein 70 protei...		Potri.006G189300 [exp]	5.29	0.9092
AT3G54770			RNA-binding (RRM/RBD/RNP motif...		Potri.008G044700 [exp]	6.70	0.8786
AT1G45000			AAA-type ATPase family protein...		Potri.005G231700 [exp]	7.34	0.9084	RPT4.1
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Potri.006G063000 [exp]	7.74	0.8955	AVP.5
AT5G58290		RPT3	regulatory particle triple-A A...		Potri.006G031000 [exp]	11.00	0.8872	RPT1.3
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.008G194900 [exp]	11.31	0.8785	Pt-POR1.1
AT1G20010		TUB5	tubulin beta-5 chain (.1)		Potri.005G239900 [exp]	14.69	0.8821
AT2G03120		ATSPP	signal peptide peptidase (.1)		Potri.001G276700 [exp]	14.83	0.8874
AT5G23250			Succinyl-CoA ligase, alpha sub...		Potri.012G036200 [exp]	16.30	0.8607

Compare expression of checked genes

Potri.001G120900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.