Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12200 557 / 0 FMO flavin monooxygenase, Flavin-binding monooxygenase family protein (.1) AT1G62620 551 / 0 Flavin-binding monooxygenase family protein (.1) AT1G62600 548 / 0 Flavin-binding monooxygenase family protein (.1) AT1G63370 547 / 0 Flavin-binding monooxygenase family protein (.1) AT1G12140 509 / 3e-179 FMOGS-OX5 ,FMO GS-OX5 flavin-monooxygenase glucosinolate S-oxygenase 5 (.1.2) AT1G62560 506 / 5e-178 FMOGS-OX3 ,FMO GS-OX3 flavin-monooxygenase glucosinolate S-oxygenase 3 (.1) AT1G62570 502 / 2e-176 FMOGS-OX4 ,FMO GS-OX4 flavin-monooxygenase glucosinolate S-oxygenase 4 (.1) AT1G65860 498 / 6e-175 FMOGS-OX1 ,FMO GS-OX1 flavin-monooxygenase glucosinolate S-oxygenase 1 (.1) AT1G62540 494 / 2e-173 FMOGS-OX2 ,FMO GS-OX2 flavin-monooxygenase glucosinolate S-oxygenase 2 (.1) AT1G62580 491 / 8e-172 NOGC1 nitric oxide-dependent guanylate cyclase 1, Flavin-binding monooxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G019900 [exp] 649 / 0 AT1G62600 513 / 0.0 Flavin-binding monooxygenase family protein (.1) Potri.001G121100 [exp] 585 / 0 AT1G62600 607 / 0.0 Flavin-binding monooxygenase family protein (.1) Potri.012G067500 [exp] 387 / 2e-131 AT5G07800 696 / 0.0 Flavin-binding monooxygenase family protein (.1) Potri.006G137600 [exp] 68 / 4e-12 AT1G19250 699 / 0.0 flavin-dependent monooxygenase 1 (.1) Potri.001G335900 [exp] 63 / 2e-10 AT1G19250 630 / 0.0 flavin-dependent monooxygenase 1 (.1) Potri.018G115800 [exp] 61 / 1e-09 AT1G19250 374 / 4e-124 flavin-dependent monooxygenase 1 (.1) Potri.005G250600 [exp] 60 / 2e-09 AT1G19250 330 / 4e-107 flavin-dependent monooxygenase 1 (.1) Potri.009G143500 [exp] 59 / 4e-09 AT1G19250 400 / 2e-134 flavin-dependent monooxygenase 1 (.1) Potri.006G060200 [exp] 58 / 6e-09 AT1G19250 378 / 5e-126 flavin-dependent monooxygenase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024598 [exp] 566 / 0 AT1G62620 587 / 0.0 Flavin-binding monooxygenase family protein (.1) Lus10024609 [exp] 417 / 4e-144 AT1G62560 444 / 1e-154 flavin-monooxygenase glucosinolate S-oxygenase 3 (.1) Lus10015731 [exp] 379 / 6e-128 AT5G07800 621 / 0.0 Flavin-binding monooxygenase family protein (.1) Lus10003474 [exp] 375 / 6e-126 AT5G07800 623 / 0.0 Flavin-binding monooxygenase family protein (.1) Lus10032247 [exp] 321 / 1e-107 AT1G12140 315 / 1e-105 flavin-monooxygenase glucosinolate S-oxygenase 5 (.1.2) Lus10032235 [exp] 100 / 1e-25 AT1G62600 117 / 2e-32 Flavin-binding monooxygenase family protein (.1) Lus10005178 [exp] 72 / 2e-13 AT1G19250 744 / 0.0 flavin-dependent monooxygenase 1 (.1) Lus10020001 [exp] 66 / 3e-11 AT1G19250 709 / 0.0 flavin-dependent monooxygenase 1 (.1) Lus10023695 [exp] 57 / 2e-08 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10002402 [exp] 56 / 3e-08 AT1G21430 427 / 5e-149 Flavin-binding monooxygenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF07992 [poplar] [flax] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Potri.001G121000.1 pacid=42789618 polypeptide=Potri.001G121000.1.p locus=Potri.001G121000 ID=Potri.001G121000.1.v4.1 annot-version=v4.1 ATGCAAACATCAAATGCTACTTCGCTCACCTCTCGCCACGTAGCTGTCATCGGTGCCGGCGCCGCCGGTTTAGTGGCGGCACGTGAGCTCCGGCGTGAAG GTCACCAAGTGGTTGTCTTTGAGAAAGATAGCCAAATTGGTGGGACATGGGTGTACACTCCACAGGTCGAAACCGACCCTCTTGGGCTAGACCCGACCCG ACACATCGTCCACACCAGTTTATACAAGTCCCTCCGGACCAACTTGCCGAGAGAGTCGATGGGCTTTATGGATTATCCATTCGTGACCCGAGCGGGTGAA GGGAGCGACCCTAGAAGGTTCCCGGGTCATGCAGAAGTGTTGAAGTATCTGCAAGATTTTGCAAGGGAGTTTGGGATTGAAGAAATGGTGAGGTTTGAGT GTGAAGTGGTTAGTGTGGAGATGGTTGATAATGAGAAATTGAAAGTGAAGTGTAAAAGGATGAGACCTGATGGTGGTGATGATGATCTGCTAGATGAGGT TTTTGATGCTGTTGTTGTTTGTAATGGACATTTCACATACCCTCGTATTGCTGAAATCCCTGGCATCAACTTGTGGCCCGGAAAGCAAATACATAGCCAT AACTATCGTACTCCTGAACTCTTCAAGGATAAAGTTGTAATTTTAATTGGCAGTTCTGCAAGTGCTATTGATTTATCCCTTGAGATTGGTGGAATTGCCA AAGAGGTGCACATTGCATCTAGATCAGTTGCCAATGATACATATGAAAAGCGGGCTGAATGTGATAATATATGGCTACATTCTATGATAAAAAGCGCACA TAAAGATGGTTCTGTGGCTTTCCGAGATGGTAACACTATCGTCGCTGATATTATTCTGCATTGCACAGGGTACAAGTATTACTTCCCATTCCTCAAAACC AATGGCATTGTGACTGTGGATGACAATCGTGTTGGACCACTCTACAAGCATGTTTTCCCACCCATTTTTGCCCCGCAGCTTTCCTTTGTCGGACTACCCT ACAGGAGTTTACCTTTCCCAATCTTTGAAATTCAAAGCAAGTGGATTTCTGGTGTTCTATCTGATCGAATTGTGCTCCCTTCACAAGAGGACATGATGGA AGATGTTAACACCTTCTACTCGACACTTGAAGATTCTGGTGTGCCTAAGCATCACACTCATAGCATGGGGGACACAATGATTGACTACAATGCTTGGGTT GCTTCTCTGTGTCAATGTCCTTGCTTTGAAGAATGGAGAGTACAAATGTTCTATGAAACGGCCAAGAGATTGAACGCCAACCCAAAGACATTTCGCGATG AATGGGAAGATGACAACCTGGTCTTGCAAGCCTGTGAAGATTTCAGCAAATACATCTGA
AA sequence Show only first row Show all	>Potri.001G121000.1 pacid=42789618 polypeptide=Potri.001G121000.1.p locus=Potri.001G121000 ID=Potri.001G121000.1.v4.1 annot-version=v4.1 MQTSNATSLTSRHVAVIGAGAAGLVAARELRREGHQVVVFEKDSQIGGTWVYTPQVETDPLGLDPTRHIVHTSLYKSLRTNLPRESMGFMDYPFVTRAGE GSDPRRFPGHAEVLKYLQDFAREFGIEEMVRFECEVVSVEMVDNEKLKVKCKRMRPDGGDDDLLDEVFDAVVVCNGHFTYPRIAEIPGINLWPGKQIHSH NYRTPELFKDKVVILIGSSASAIDLSLEIGGIAKEVHIASRSVANDTYEKRAECDNIWLHSMIKSAHKDGSVAFRDGNTIVADIILHCTGYKYYFPFLKT NGIVTVDDNRVGPLYKHVFPPIFAPQLSFVGLPYRSLPFPIFEIQSKWISGVLSDRIVLPSQEDMMEDVNTFYSTLEDSGVPKHHTHSMGDTMIDYNAWV ASLCQCPCFEEWRVQMFYETAKRLNANPKTFRDEWEDDNLVLQACEDFSKYI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12200		FMO	flavin monooxygenase, Flavin-b...		Potri.001G121000 [exp]	0	1
AT5G42720			Glycosyl hydrolase family 17 p...		Potri.014G183000 [exp]	6.55	0.8572
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.001G036500 [exp]	7.14	0.7049
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G182800 [exp]	8.36	0.8566
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G185100 [exp]	10.00	0.8436
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G184100 [exp]	10.24	0.8461
AT4G34850		LAP5	LESS ADHESIVE POLLEN 5, Chalco...		Potri.004G167300 [exp]	12.80	0.6491	CHSL6
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G184900 [exp]	15.96	0.8434
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Potri.009G098000 [exp]	17.02	0.7607
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G182166 [exp]	17.23	0.8261
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G183500 [exp]	19.07	0.8336

Compare expression of checked genes

Potri.001G121000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.