Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62600 608 / 0 Flavin-binding monooxygenase family protein (.1) AT1G63370 602 / 0 Flavin-binding monooxygenase family protein (.1) AT1G62620 595 / 0 Flavin-binding monooxygenase family protein (.1) AT1G12200 550 / 0 FMO flavin monooxygenase, Flavin-binding monooxygenase family protein (.1) AT1G12140 541 / 0 FMOGS-OX5 ,FMO GS-OX5 flavin-monooxygenase glucosinolate S-oxygenase 5 (.1.2) AT1G62560 517 / 0 FMOGS-OX3 ,FMO GS-OX3 flavin-monooxygenase glucosinolate S-oxygenase 3 (.1) AT1G62580 517 / 0 NOGC1 nitric oxide-dependent guanylate cyclase 1, Flavin-binding monooxygenase family protein (.1) AT1G65860 513 / 0 FMOGS-OX1 ,FMO GS-OX1 flavin-monooxygenase glucosinolate S-oxygenase 1 (.1) AT1G62570 509 / 3e-179 FMOGS-OX4 ,FMO GS-OX4 flavin-monooxygenase glucosinolate S-oxygenase 4 (.1) AT1G62540 506 / 6e-178 FMOGS-OX2 ,FMO GS-OX2 flavin-monooxygenase glucosinolate S-oxygenase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G019900 [exp] 583 / 0 AT1G62600 513 / 0.0 Flavin-binding monooxygenase family protein (.1) Potri.001G121000 [exp] 580 / 0 AT1G12200 557 / 0.0 flavin monooxygenase, Flavin-binding monooxygenase family protein (.1) Potri.012G067500 [exp] 408 / 2e-139 AT5G07800 696 / 0.0 Flavin-binding monooxygenase family protein (.1) Potri.001G335900 [exp] 62 / 3e-10 AT1G19250 630 / 0.0 flavin-dependent monooxygenase 1 (.1) Potri.006G137600 [exp] 62 / 3e-10 AT1G19250 699 / 0.0 flavin-dependent monooxygenase 1 (.1) Potri.010G062400 [exp] 61 / 8e-10 AT1G04610 657 / 0.0 YUCCA 3 (.1) Potri.002G207400 [exp] 54 / 1e-07 AT1G48910 429 / 3e-150 YUCCA 10, Flavin-containing monooxygenase family protein (.1) Potri.018G115800 [exp] 52 / 7e-07 AT1G19250 374 / 4e-124 flavin-dependent monooxygenase 1 (.1) Potri.009G143500 [exp] 52 / 7e-07 AT1G19250 400 / 2e-134 flavin-dependent monooxygenase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024598 [exp] 627 / 0 AT1G62620 587 / 0.0 Flavin-binding monooxygenase family protein (.1) Lus10024609 [exp] 466 / 4e-163 AT1G62560 444 / 1e-154 flavin-monooxygenase glucosinolate S-oxygenase 3 (.1) Lus10015731 [exp] 395 / 5e-134 AT5G07800 621 / 0.0 Flavin-binding monooxygenase family protein (.1) Lus10003474 [exp] 384 / 2e-129 AT5G07800 623 / 0.0 Flavin-binding monooxygenase family protein (.1) Lus10032247 [exp] 349 / 1e-118 AT1G12140 315 / 1e-105 flavin-monooxygenase glucosinolate S-oxygenase 5 (.1.2) Lus10032235 [exp] 125 / 8e-35 AT1G62600 117 / 2e-32 Flavin-binding monooxygenase family protein (.1) Lus10023695 [exp] 64 / 7e-11 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10005178 [exp] 60 / 2e-09 AT1G19250 744 / 0.0 flavin-dependent monooxygenase 1 (.1) Lus10020001 [exp] 59 / 3e-09 AT1G19250 709 / 0.0 flavin-dependent monooxygenase 1 (.1) Lus10038126 [exp] 59 / 6e-09 AT1G19250 735 / 0.0 flavin-dependent monooxygenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00743 [poplar] [flax] FMO-like Flavin-binding monooxygenase-like CL0063 [poplar] [flax] NADP_Rossmann PF13738 [poplar] [flax] Pyr_redox_3 Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Potri.001G121100.1 pacid=42789483 polypeptide=Potri.001G121100.1.p locus=Potri.001G121100 ID=Potri.001G121100.1.v4.1 annot-version=v4.1 ATGCCACCACCTCAACTTCCTCCACCAATCTCCCGCCACGTGGCGGTGATCGGTGCCGGAGCCGCCGGCCTCGTTAGTGCCCGTGAGCTCCGGAGAGAGG GTCATGATGTTGTAGTCTTTGAAAGAGACAACCAAGTAGGTGGCACATGGGTGTACAATCCCCGAGTCGAGCCCGACCCGTTAAGCCTCGACCCGAATCG ACGCATAATTCACTCGAGCCTCTATAGCTCCCTCCGGACCAACCTCCCAAGAGAAGTAATGGGTTTCAAAGATTATCCCTTTATAGCAAAAAATGATAAA AAGAGAGACCAGAGAAGGTTTCCGGGCCATCGAGAGGTGTTGTTGTATTTGCAGGATTTTGCAAGTGAGTTTGGGATTGAAGAAATGGTGAGGTTTGATA CTGAAGTGGTTCATGTGGGGCCTGTTGAGGATAATATTGGAAAGTGGATTGTGAGGTCTAAAAGGAAAATAAGTGATGATGATAGGGAGGTTAGTTTTGG ATTTGATGTTGACGAGGAGATTTATGATGCTGTTGTTATCTGTAATGGACATTACACTGAACCTCGTATTGCTCAAATACCAGGGATCAGTTCATGGCCA GGAAAACAGATGCATAGCCACAATTATCGTACTCCTGAGGGCTTTCAAGATCAAGTGGCAATTTTGATTGGAAGTTCAGCTAGTTCTGATGATATATCCA GAGAAATTGCTGGAGTTGCTAAAGAGGTCCATGTTGCCTCAAGATCAGTTGCGGACGAAACATATCAAGAGCAGCCTGGATATGATAATATGTGGCTTCA TTCTATGATAGAAAGTGTGCATGATGATGGTTCTGTGATCTTCAGAAATGGGAGAGTTGTCGTTGCTGACATTATTCTACATTGCACTGGGTACAAGTAT CACTTCCCTTTTCTAGACACCAATGGCATTGTGACCATGGATGAAAATCGTGTGGCCCCCCTGTACAAGCAAGTTTTTCCACCAGTTCTGGCCCCATGGC TTTCATTTGTTGGGTTACCGTGGAAGGTTGTCCCTTTTCCCTTGGTTGAACTTCAAACCAAGTGGATTGCTGGTGTTTTATCAGGTCATATTGCACTTCC GTCACCTGAGGAGATGATGGAAGATGTTAAAGCCTTCTATGAGACACTAGAATCTTCCAACAAACCCAAACACTACACTCATAATTTGGGTGGTTGTCAG TTCGAGTACGACAACTGGCTTGCTTCTCAGTGCGGTTGCCCAGGGATCGAAGAATGGAGAAGGCAAATGTATGATGCAGCTAGCAAGAGTAAGCGGCTCC GGCCAGAGATATACCGTGATGAATGGGATGATGATGACCTGGTCTTGGAAGCCTACGGGGACTTCACAAAGTACACTTGA
AA sequence Show only first row Show all	>Potri.001G121100.1 pacid=42789483 polypeptide=Potri.001G121100.1.p locus=Potri.001G121100 ID=Potri.001G121100.1.v4.1 annot-version=v4.1 MPPPQLPPPISRHVAVIGAGAAGLVSARELRREGHDVVVFERDNQVGGTWVYNPRVEPDPLSLDPNRRIIHSSLYSSLRTNLPREVMGFKDYPFIAKNDK KRDQRRFPGHREVLLYLQDFASEFGIEEMVRFDTEVVHVGPVEDNIGKWIVRSKRKISDDDREVSFGFDVDEEIYDAVVICNGHYTEPRIAQIPGISSWP GKQMHSHNYRTPEGFQDQVAILIGSSASSDDISREIAGVAKEVHVASRSVADETYQEQPGYDNMWLHSMIESVHDDGSVIFRNGRVVVADIILHCTGYKY HFPFLDTNGIVTMDENRVAPLYKQVFPPVLAPWLSFVGLPWKVVPFPLVELQTKWIAGVLSGHIALPSPEEMMEDVKAFYETLESSNKPKHYTHNLGGCQ FEYDNWLASQCGCPGIEEWRRQMYDAASKSKRLRPEIYRDEWDDDDLVLEAYGDFTKYT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G62600			Flavin-binding monooxygenase f...		Potri.001G121100 [exp]	0	1
AT3G52220			unknown protein		Potri.008G019100 [exp]	1.73	0.8848
AT4G19950			unknown protein		Potri.007G105700 [exp]	2.44	0.8652	ORF.6
AT2G44410			RING/U-box superfamily protein...		Potri.009G023300 [exp]	4.00	0.8826
AT3G58500		PP2A-4, EP7, PP...	protein phosphatase 2A-4 (.1)		Potri.006G196100 [exp]	5.19	0.8396
AT4G29260			HAD superfamily, subfamily III...		Potri.006G152900 [exp]	7.21	0.8539
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Potri.008G225000 [exp]	8.94	0.8376
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Potri.008G108000 [exp]	10.95	0.8424
AT4G15030			unknown protein		Potri.001G266200 [exp]	11.95	0.8259
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.009G170100 [exp]	12.40	0.8428
AT4G25180			RNA polymerase III RPC4 (.1)		Potri.003G107300 [exp]	12.64	0.8206

Compare expression of checked genes

Potri.001G121100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.