Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62530 106 / 6e-25 Plant protein of unknown function (DUF863) (.1), Plant protein of unknown function (DUF863) (.2) AT1G12120 103 / 3e-23 Plant protein of unknown function (DUF863) (.1) AT1G13940 57 / 6e-08 Plant protein of unknown function (DUF863) (.1) AT1G26620 55 / 2e-07 Plant protein of unknown function (DUF863) (.1) AT1G69360 54 / 4e-07 Plant protein of unknown function (DUF863) (.1) AT5G61300 50 / 6e-06 unknown protein AT5G67390 42 / 0.0005 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G112000 [exp] 1111 / 0 AT1G62530 109 / 4e-26 Plant protein of unknown function (DUF863) (.1), Plant protein of unknown function (DUF863) (.2) Potri.008G092800 [exp] 51 / 4e-06 AT1G13940 459 / 2e-144 Plant protein of unknown function (DUF863) (.1) Potri.010G162000 [exp] 49 / 1e-05 AT1G13940 437 / 2e-136 Plant protein of unknown function (DUF863) (.1) Potri.017G088900 [exp] 47 / 4e-05 AT1G69360 152 / 2e-37 Plant protein of unknown function (DUF863) (.1) Potri.004G125900 [exp] 45 / 0.0002 AT1G69360 149 / 2e-36 Plant protein of unknown function (DUF863) (.1) Potri.007G053300 [exp] 42 / 0.0006 AT5G67390 100 / 3e-26 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024611 [exp] 139 / 2e-34 AT1G12120 97 / 6e-22 Plant protein of unknown function (DUF863) (.1) Lus10037122 [exp] 56 / 1e-07 AT1G69360 257 / 8e-74 Plant protein of unknown function (DUF863) (.1) Lus10036807 [exp] 56 / 1e-07 AT1G69360 254 / 9e-73 Plant protein of unknown function (DUF863) (.1) Lus10030419 [exp] 47 / 5e-05 AT1G13940 397 / 1e-121 Plant protein of unknown function (DUF863) (.1) Lus10026640 [exp] 47 / 6e-05 AT1G13940 323 / 7e-96 Plant protein of unknown function (DUF863) (.1) Lus10034722 [exp] 46 / 0.0001 AT1G13940 106 / 3e-23 Plant protein of unknown function (DUF863) (.1) Lus10021644 [exp] 44 / 0.0004 AT1G13940 105 / 5e-23 Plant protein of unknown function (DUF863) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05904 [poplar] [flax] DUF863 Plant protein of unknown function (DUF863)
Representative CDS sequence Show only first row Show all	>Potri.001G121200.2 pacid=42792983 polypeptide=Potri.001G121200.2.p locus=Potri.001G121200 ID=Potri.001G121200.2.v4.1 annot-version=v4.1 ATGTGGTGTGAGATGATGGACTTGTTCGATCCTGGCAAGAAGATGTTGATGCAAGGAGATTTCGATCTGAACTCTGTACAGCGACACGCAGATTCATTTA AAGGAGTTATAAAGCAGACAATTCTCAAGCAGGAGGTTATATTTAGGACTCAGGTCCATGAACTCCATCAGTTATATAGGACGCAAAAAACACTGATGAA GGATCTTGGTAGTAAGTGTTGTGGTGGATACAATTCATGGGATGCAAATGTACAACCATCTCTACCACCTTTTCCGAACCCTTCAAGAATTGAACCATTG GCGAAAGAAACAGGAATTTCCTCAATTTCCAAGGTGGGTCCAGCACCTTTCGCAAGCAAGGAGTTGTTACATGGGTGCCAAGATACATATTATAGACTTA AGCAGATGCCTCTTGATCTTCAACTCTCTGCTAACAAACTCATCAACCATGTCGAGGAAGATCGCCCAAACAGAGGACATGCCTGGAATCATCCCTTAAA AGAACCAATAGACGTTAAACATCCTCTCTCTGCTAATTACTCTTCAGGTACAGAGGAGTTGAAGCTTTCCCTGACTACTAGAGATGACTATAGAAGAACA GAAGGTACATTGCGGACTTGGTTTGATAAGAGAACTCATCAGTACTGTTCCGTGATTGATCTGGAATCAGAAGAGAGGATATCAGATGACAGTGCAAAAT GCACACCTTCTGTTGGCTGTGCTACTCCAGAAACTTATTCCCCAGGGAAGTACAAAAAAGTTTCTGCCTTCTCTAGTTTAATTTTCTTAACTAGTGCAGA GAAAGATCCATCTGTCGAGATTTCAGAAAGCAGCTATTTTCAAGAACATAGTGAATGCTGCCAAGAGCAGACCTCTTCTAATGAAGGAATTATGGAGTGC CATGATGATAACCTGTGTAATAATCTTTCCACCAAAATGAAACAGTCCTCTTCACATAAAGGAACTGATTTGGACCTCAACAAAGCTCACTTTGATGACC CGTCATGTTTCTCAAATGATCCTCTAGTGGCCTGTCCTTCACCAGCTAGATCAGCTGGTGACTCTGCGGCAGTTATTAGGAGCATGCAGGAAGAAACCTG TCCAACCACATTTTGGGACAAACAGGTCAATAGCTGCTCAAATGAAATTTCTGACATGCTTGCAGAAAATAATTTCATAAATGCTACTGAAGTAGATTTA AACAGCACAACTAGGAGTACAGATGTTTGGACCGGAAATTCTGAGCAGGATGGAATAAGTGGTACTTTACCAAACCCTACAGGCCCGGAGCCCATACCCA GCCCCCCTGTAGACATTTCTGAAGACATCGACAGGTACACTGGCGACCACAAGAATGATAATGTTGTGATGAAGGCGAAACTCGCGAATTGTCTTCTACA TGATTTAAATCAAATGCCTTTAGATACTAGAGAACTGAGCTCTGAGAAGAGCCAAGTGGAAGATGCTGTCTTTTCATGTATTGATCAGTATCAGAATGAT GGACATGGCAATCAATCTCCTGTTTCATGCAAGTCTGGTATTTATGATAATGATTCAAACAGTGGAAAGACAGTGCACTTTGGCAGTATGTCTGGTGATG TGAACACTGATTTGAAAACCCTCTCAGGGTCACAAGTTGCCGGTGCCTCATCAGATGAGCATGACCTAAGAACTTCTGACAGTGGTGATTTGAAAAATGA ATGCTACGACAAGAAAGAAGAATCAGCTGAAGTTGATGTTTTGATGAAAAGAGCAGCTGAATCACTTGTAGATATGTCTTTGAAGAATTTAATTTGCTTT CAAGATTCTTTTGCCAAAGAAGGGTCCAAGGAGATGAGAAAAGAGACGAGGGAGCAGCCACAGTATACTTGCGATTCTTTTGAATTAATGGTTATGGAAC TAACGGAAAGCAATGTGGATGAAAATTCAGTGACATCAAAGCCATATGAAGTAAATGATATGGAAACAAAAGATTTTGGTTCTAAACTGAGACGAGGAAG GAGAATGAAAGATTTCCAGAAGGAGATACTGCCTGCTCTGGCATCTCTTTCTAGACACGAAATTCATGAGGATATAAACATTATCGAGGGAGTTTTAAGA TCAAGAGAATACCGCAAAATCAGAGGCAAGATGGCAACAAATGGAGAGAACTGGTCTCCACTGGTGAGAAGTAGACGGTCAAGACTCAATAATGTTGGGA GGAGAAGAAGTTCATCGAAGTTCAACTAG
AA sequence Show only first row Show all	>Potri.001G121200.2 pacid=42792983 polypeptide=Potri.001G121200.2.p locus=Potri.001G121200 ID=Potri.001G121200.2.v4.1 annot-version=v4.1 MWCEMMDLFDPGKKMLMQGDFDLNSVQRHADSFKGVIKQTILKQEVIFRTQVHELHQLYRTQKTLMKDLGSKCCGGYNSWDANVQPSLPPFPNPSRIEPL AKETGISSISKVGPAPFASKELLHGCQDTYYRLKQMPLDLQLSANKLINHVEEDRPNRGHAWNHPLKEPIDVKHPLSANYSSGTEELKLSLTTRDDYRRT EGTLRTWFDKRTHQYCSVIDLESEERISDDSAKCTPSVGCATPETYSPGKYKKVSAFSSLIFLTSAEKDPSVEISESSYFQEHSECCQEQTSSNEGIMEC HDDNLCNNLSTKMKQSSSHKGTDLDLNKAHFDDPSCFSNDPLVACPSPARSAGDSAAVIRSMQEETCPTTFWDKQVNSCSNEISDMLAENNFINATEVDL NSTTRSTDVWTGNSEQDGISGTLPNPTGPEPIPSPPVDISEDIDRYTGDHKNDNVVMKAKLANCLLHDLNQMPLDTRELSSEKSQVEDAVFSCIDQYQND GHGNQSPVSCKSGIYDNDSNSGKTVHFGSMSGDVNTDLKTLSGSQVAGASSDEHDLRTSDSGDLKNECYDKKEESAEVDVLMKRAAESLVDMSLKNLICF QDSFAKEGSKEMRKETREQPQYTCDSFELMVMELTESNVDENSVTSKPYEVNDMETKDFGSKLRRGRRMKDFQKEILPALASLSRHEIHEDINIIEGVLR SREYRKIRGKMATNGENWSPLVRSRRSRLNNVGRRRSSSKFN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G62530			Plant protein of unknown funct...		Potri.001G121200 [exp]	0	1
AT3G13860		HSP60-3A	heat shock protein 60-3A (.1)		Potri.003G039475 [exp]	8.83	0.8405
					Potri.010G242200 [exp]	9.38	0.8132
AT3G53810			Concanavalin A-like lectin pro...		Potri.009G036300 [exp]	16.24	0.7798
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Potri.005G125300 [exp]	16.58	0.8199
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Potri.004G087400 [exp]	30.46	0.7765
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Potri.009G063800 [exp]	32.86	0.7693
AT3G22470			Pentatricopeptide repeat (PPR)...		Potri.019G062332 [exp]	36.74	0.7750
AT1G17680			tetratricopeptide repeat (TPR)...		Potri.013G128900 [exp]	38.57	0.7743
AT2G20280	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.016G084100 [exp]	39.79	0.7699
					Potri.010G228883 [exp]	41.68	0.7969

Compare expression of checked genes

Potri.001G121200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.