Plant FIBer expression Database

Potri.001G121350 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G121350.1 pacid=42788145 polypeptide=Potri.001G121350.1.p locus=Potri.001G121350 ID=Potri.001G121350.1.v4.1 annot-version=v4.1
ATGGCCAGGAGGGGCAGCTGTCGGATTTGGTACTTATTAAAATGGGATATCTCCATGGAAGATAGTCCAGAGATCTTGTTGTCCCCGCTTTCTCCATACA
CTTACCTCTCAACAGCCAATTACCAAAGCACCTTTGGCTATATTTTTTGGGCAAAAAATGAACAAATGCTCACACAATGGACAGTCCCTTGTTGTTGTCA
GCTTGTACCTACCAAACCAGGCACTTGCTTGCTGGGAACGATAAGCTTCACAGTTGTTCATCTTGGGACTTCGGCCTGTGAGTTCCTGGCCCTTTCGTAT
AACCTAATTAACCTGGCAAAACACTACGAAGCAATAAGTTTGCAAATTGCATTGGTGATTTTTTTGGATGAGCTTTCTGCCCTGGTATGCTGA
AA sequence
>Potri.001G121350.1 pacid=42788145 polypeptide=Potri.001G121350.1.p locus=Potri.001G121350 ID=Potri.001G121350.1.v4.1 annot-version=v4.1
MARRGSCRIWYLLKWDISMEDSPEILLSPLSPYTYLSTANYQSTFGYIFWAKNEQMLTQWTVPCCCQLVPTKPGTCLLGTISFTVVHLGTSACEFLALSY
NLINLAKHYEAISLQIALVIFLDELSALVC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G121350
[exp]
0 1
AT1G67980 CCOAMT caffeoyl-CoA 3-O-methyltransfe... Potri.008G136600
[exp]
2.64 0.8596
AT2G21385 unknown protein Potri.009G121902
[exp]
5.00 0.8418
AT2G37710 RLK receptor lectin kinase (.1) Potri.009G036450
[exp]
5.09 0.8546
AT1G26660 Prefoldin chaperone subunit fa... Potri.010G163600
[exp]
5.47 0.8446
AT5G12250 TUB6 beta-6 tubulin (.1) Potri.003G126800
[exp]
7.93 0.7873 TUB10
AT1G20670 DNA-binding bromodomain-contai... Potri.019G132601
[exp]
8.00 0.8435
Potri.001G055675
[exp]
8.24 0.8058
AT1G09890 Rhamnogalacturonate lyase fami... Potri.002G110100
[exp]
8.36 0.8143
AT2G07180 Protein kinase superfamily pro... Potri.006G079600
[exp]
8.66 0.8135
AT2G42410 C2H2ZnF ATZFP11, ZFP11 zinc finger protein 11 (.1) Potri.002G041700
[exp]
8.83 0.8145

Potri.001G121350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.