Plant FIBer expression Database

MTN30.1 (Potri.001G121400) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol MTN30.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G22570 299 / 5e-105 APT3 adenine phosphoribosyl transferase 3 (.1)
AT4G12440 296 / 3e-104 APT4 adenine phosphoribosyl transferase 4 (.1.2)
AT1G27450 272 / 1e-94 APRT, ATAPT1, APT1 ARABIDOPSIS THALIANA ADENINE PHOSPHORIBOSYLTRANSFERASE 1, adenine phosphoribosyl transferase 1 (.1.2.3)
AT1G80050 268 / 1e-92 PHT1.1, ATAPT2, APT2 adenine phosphoribosyl transferase 2 (.1)
AT5G11160 262 / 2e-90 APT5 adenine phosphoribosyltransferase 5 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G017200
[exp]
285 / 2e-98 AT1G27450 277 / 2e-94 ARABIDOPSIS THALIANA ADENINE PHOSPHORIBOSYLTRANSFERASE 1, adenine phosphoribosyl transferase 1 (.1.2.3)
Potri.006G255900
[exp]
277 / 3e-96 AT5G11160 315 / 4e-111 adenine phosphoribosyltransferase 5 (.1)
Potri.018G026200
[exp]
270 / 1e-93 AT5G11160 313 / 2e-110 adenine phosphoribosyltransferase 5 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024612
[exp]
332 / 3e-118 AT4G22570 305 / 2e-107 adenine phosphoribosyl transferase 3 (.1)
Lus10032249
[exp]
327 / 5e-116 AT4G12440 299 / 4e-105 adenine phosphoribosyl transferase 4 (.1.2)
Lus10004344
[exp]
325 / 3e-115 AT4G22570 301 / 4e-106 adenine phosphoribosyl transferase 3 (.1)
Lus10018695
[exp]
287 / 3e-100 AT1G27450 303 / 9e-107 ARABIDOPSIS THALIANA ADENINE PHOSPHORIBOSYLTRANSFERASE 1, adenine phosphoribosyl transferase 1 (.1.2.3)
Lus10007757
[exp]
287 / 4e-100 AT1G27450 303 / 1e-106 ARABIDOPSIS THALIANA ADENINE PHOSPHORIBOSYLTRANSFERASE 1, adenine phosphoribosyl transferase 1 (.1.2.3)
Lus10002924
[exp]
268 / 1e-92 AT5G11160 316 / 3e-111 adenine phosphoribosyltransferase 5 (.1)
Lus10001497
[exp]
264 / 5e-91 AT5G11160 315 / 4e-111 adenine phosphoribosyltransferase 5 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0533 PRTase-like PF00156 Pribosyltran Phosphoribosyl transferase domain
Representative CDS sequence
>Potri.001G121400.2 pacid=42793456 polypeptide=Potri.001G121400.2.p locus=Potri.001G121400 ID=Potri.001G121400.2.v4.1 annot-version=v4.1
ATGTCGGCTTACAGAGATGAAGATCCTCGTATTCATGACATCAAAACTAGGATTCGTGTTGTTCCCAATTTTCCAAAACCAGGTATTATGTTTCAAGATA
TCACCACCCTATTACTGAATCCTAAAGCATTCAAGGACACAATTGATTTGTTTGTTGAGAGATACAAAGGCAAAAACATTTCAGTTGTTGCAGGAATAGA
GGCTCGGGGATTTATATTCGGACCTCCCATTGCTTTGGCAATAGGAGCAAAGTTTGTTCCTCTGAGAAAACCAAGGAAGTTGCCTGGCGAAGTTATTTCA
GAAAAGTATATTCTAGAATACGGAAGAGATTGTCTTGAGATGCATGTTGGAGCAGTCAAATCGGGTGAACGTGCTTTGGTGGTTGATGATTTGATTGCCA
CTGGTGGCACTCTGTGTGCTGCCATGAATTTACTCGAACGTGCTGGAGCAGAAGTGGTTGAATGTGCATGTGTAATTGAATTACCAGATTTGAAGGGTCG
GGAGCGATTGAATGGCAAGCCATTGTATGTACTCGTGGAGTCCCATTAA
AA sequence
>Potri.001G121400.2 pacid=42793456 polypeptide=Potri.001G121400.2.p locus=Potri.001G121400 ID=Potri.001G121400.2.v4.1 annot-version=v4.1
MSAYRDEDPRIHDIKTRIRVVPNFPKPGIMFQDITTLLLNPKAFKDTIDLFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVPLRKPRKLPGEVIS
EKYILEYGRDCLEMHVGAVKSGERALVVDDLIATGGTLCAAMNLLERAGAEVVECACVIELPDLKGRERLNGKPLYVLVESH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G22570 APT3 adenine phosphoribosyl transfe... Potri.001G121400
[exp]
0 1 MTN30.1
AT3G60080 RING/U-box superfamily protein... Potri.001G231000
[exp]
5.29 0.8593
AT2G18730 ATDGK3 diacylglycerol kinase 3 (.1) Potri.018G096700
[exp]
9.38 0.8511
AT5G47900 Protein of unknown function (D... Potri.003G159200
[exp]
13.11 0.7540
AT2G41710 AP2_ERF Integrase-type DNA-binding sup... Potri.006G049700
[exp]
15.87 0.8192
AT1G71070 Core-2/I-branching beta-1,6-N-... Potri.008G006500
[exp]
16.91 0.8559
AT2G46225 ABIL1, ABI1L1 ABI-1-like 1 (.1.2.3) Potri.014G092300
[exp]
17.02 0.8288
AT5G23050 AAE17 acyl-activating enzyme 17 (.1) Potri.015G056000
[exp]
20.49 0.8208
AT5G60720 Protein of unknown function, D... Potri.009G009500
[exp]
22.64 0.8554
AT5G45970 ATRAC2, ATROP7,... RHO-RELATED PROTEIN FROM PLANT... Potri.011G061500
[exp]
27.62 0.8322 ARAC2.1
AT3G61750 Cytochrome b561/ferric reducta... Potri.014G098700
[exp]
30.82 0.8475

Potri.001G121400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.