Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17260 546 / 0 Lactate/malate dehydrogenase family protein (.1) AT3G15020 58 / 3e-09 mMDH2 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) AT1G53240 57 / 9e-09 mMDH1 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G111201 [exp] 517 / 0 AT4G17260 477 / 3e-171 Lactate/malate dehydrogenase family protein (.1) Potri.008G135920 [exp] 429 / 6e-153 AT4G17260 372 / 1e-130 Lactate/malate dehydrogenase family protein (.1) Potri.004G054200 [exp] 60 / 9e-10 AT1G53240 520 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Potri.017G102000 [exp] 59 / 1e-09 AT3G47520 591 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.004G112800 [exp] 57 / 9e-09 AT3G47520 583 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.017G101900 [exp] 56 / 1e-08 AT3G47520 580 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.017G152000 [exp] 52 / 2e-07 AT1G53240 277 / 8e-93 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Potri.011G096300 [exp] 51 / 6e-07 AT3G15020 541 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004350 [exp] 563 / 0 AT4G17260 550 / 0.0 Lactate/malate dehydrogenase family protein (.1) Lus10002982 [exp] 200 / 2e-64 AT4G17260 198 / 6e-64 Lactate/malate dehydrogenase family protein (.1) Lus10002983 [exp] 167 / 2e-51 AT4G17260 159 / 3e-48 Lactate/malate dehydrogenase family protein (.1) Lus10028931 [exp] 92 / 2e-22 AT4G17260 88 / 1e-21 Lactate/malate dehydrogenase family protein (.1) Lus10012459 [exp] 57 / 6e-09 AT2G22780 578 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10019096 [exp] 56 / 2e-08 AT3G47520 575 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10034458 [exp] 56 / 2e-08 AT3G47520 572 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10017939 [exp] 56 / 3e-08 AT1G53240 578 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Lus10013680 [exp] 55 / 3e-08 AT1G53240 520 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Lus10020501 [exp] 54 / 7e-08 AT5G09660 482 / 2e-172 peroxisomal NAD-malate dehydrogenase 2 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00056 [poplar] [flax] Ldh_1_N lactate/malate dehydrogenase, NAD binding domain CL0341 [poplar] [flax] LDH_C PF02866 [poplar] [flax] Ldh_1_C lactate/malate dehydrogenase, alpha/beta C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G122400.2 pacid=42789162 polypeptide=Potri.001G122400.2.p locus=Potri.001G122400 ID=Potri.001G122400.2.v4.1 annot-version=v4.1 ATGCAAAAGAGCGCTTCAGCTTCTTCATTAGGCCCAGGAGGCCTAGACCTGTCTCAGATCTTCTTCAAACCAATCCAAAACACATCTCCGCCATCACCCA CCAAACGCCACACCAAAATTTCTGTTATTGGTACCGGCAATGTAGGCATGGCAATAGCCCAAACAATTTTGACGCAAGACTTAGCTGACGAGCTTGCCCT TGTTGATGCCATACCTGACAAGCTCCGCGGAGAAATGCTTGATCTCCAACATGCTGCAGCTTTTTTACCCCGCACCAAAATTCTTGCATCCACTGATTAC TCTGTCACTGTTGGATCTGATCTTTGTATTGTTACTGCTGGGGCTCGACAGATTGCCGGGGAGTCGAGGTTGAATTTGTTGCAGAGGAATGTTGCAATGT TTCAGGGGATTATACCTCCACTTGCTCAGTATTCTCCTGACACGATCTTGATGATTGTGTCGAATCCTGTTGATGTGTTGACTTATGTGGCCTGGAAGTT GTCGGGGTTTCCTTCGAATCGGGTTATTGGATCTGGTACCAATTTGGATAGCTCCAGGTTTCGGTTCTTGATTGCTGATCATCTTGATGTCAACGCCCAG GATGTACAGGCTTACATTGTTGGTGAGCACGGGGATAGTTCTGTGGCATTGTGGTCTAGCATAAGTGTAGGAGGAGTGCCCGTATTGAGCTTCTTAGAGA AGCAGCAAATACCCTATGAGAAGGATGCACTGGAGAAAATCCACAAAGCAGTTGTAGAGAGTGCATATGAAGTGATTAGTCTCAAGGGCTACACATCTTG GGCAATTGGGTACTCAGCTGCTAACTTGGCTCGGTCCATTCTCAGAGACCAGAGGAAAATCCACCCTGTTTCCGTTCTTGCAAATGGGTTTTATGGCATT GGCGATGGGGACGTGTTCTTGAGCTTGCCTGCACAGCTAGGTAGAGGAGGGGTTTTGGGGGTGACCAATGTGCATTTGACGGATGAGGAGGCACAAAGGC TCAGGAACTCTGCTAAGACCATCTCGGAGGTGCAAAGCCAGTTGGGACTTTGA
AA sequence Show only first row Show all	>Potri.001G122400.2 pacid=42789162 polypeptide=Potri.001G122400.2.p locus=Potri.001G122400 ID=Potri.001G122400.2.v4.1 annot-version=v4.1 MQKSASASSLGPGGLDLSQIFFKPIQNTSPPSPTKRHTKISVIGTGNVGMAIAQTILTQDLADELALVDAIPDKLRGEMLDLQHAAAFLPRTKILASTDY SVTVGSDLCIVTAGARQIAGESRLNLLQRNVAMFQGIIPPLAQYSPDTILMIVSNPVDVLTYVAWKLSGFPSNRVIGSGTNLDSSRFRFLIADHLDVNAQ DVQAYIVGEHGDSSVALWSSISVGGVPVLSFLEKQQIPYEKDALEKIHKAVVESAYEVISLKGYTSWAIGYSAANLARSILRDQRKIHPVSVLANGFYGI GDGDVFLSLPAQLGRGGVLGVTNVHLTDEEAQRLRNSAKTISEVQSQLGL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17260			Lactate/malate dehydrogenase f...		Potri.001G122400 [exp]	0	1
AT1G57820		ORTH2, VIM1	VARIANT IN METHYLATION 1, ORTH...		Potri.001G067700 [exp]	3.31	0.7054
AT1G16300		GAPCP-2	glyceraldehyde-3-phosphate deh...		Potri.010G172400 [exp]	3.74	0.6812
AT4G37360		CYP81D2	"cytochrome P450, family 81, s...		Potri.014G021800 [exp]	4.89	0.6736
AT1G26610	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.010G159600 [exp]	7.48	0.6370
AT1G67480			Galactose oxidase/kelch repeat...		Potri.013G104300 [exp]	8.06	0.6244
AT5G06680		ATSPC98, SPC98,...	ARABIDOPSIS THALIANA GAMMA TUB...		Potri.006G194200 [exp]	8.48	0.6077
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Potri.003G097100 [exp]	9.79	0.6546
AT1G01730			unknown protein		Potri.002G158500 [exp]	10.95	0.6250
AT2G05590			TLD-domain containing nucleola...		Potri.010G065900 [exp]	11.61	0.5769
AT2G43230			Protein kinase superfamily pro...		Potri.007G124000 [exp]	15.29	0.6412

Compare expression of checked genes

Potri.001G122400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.