Plant FIBer expression Database

Potri.001G123100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G47580 725 / 0 ASG7 ALTERED SEED GERMINATION 7, unknown protein
AT4G17250 702 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G110700
[exp]
1204 / 0 AT5G47580 697 / 0.0 ALTERED SEED GERMINATION 7, unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004355
[exp]
833 / 0 AT4G17250 697 / 0.0 unknown protein
Lus10028936
[exp]
652 / 0 AT4G17250 525 / 3e-179 unknown protein
Lus10008508
[exp]
642 / 0 AT4G17250 583 / 0.0 unknown protein
Lus10000731
[exp]
634 / 0 AT4G17250 586 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Potri.001G123100.2 pacid=42788723 polypeptide=Potri.001G123100.2.p locus=Potri.001G123100 ID=Potri.001G123100.2.v4.1 annot-version=v4.1
ATGGGGAAACTGGGCTGTGGAATCGATGGTGGTCTGAATGAAGCAAAGTTCAGTGCACCTATACCATGGATTGGTCTCTACATAGCAGTGGCATCTCTGG
CCTGTGCAATTGCTATGGCTGCGGATTTCATCCGTGGCTTCCGCCAACAGAAGTTCTGGTTCCCGAGCAAATTCTTCTCCATTAATGCCACTTCACTGAC
CATAATAGCTGTGGCAGTCAAATTGTCAGTGGATCTAAACACTGCTATGCCTCGCCGCGTTGATCAGCTCGCAAAACTTAGCAGTGGTGCCTTGCTCTGT
ACAGTAATGGGTAACTCTATGCCTTCTCTAGGAACTATGGACAACAATGATTTATACACAAATATTATTGCTTTAGGAATACTCGTTGTTACTGTTATTG
TTAATACGGGAATCCAATTAGGCACTGGTGTAATATATCTTCACTGGAAAGAGCATGCTTTAATTATGTTTCTCATGCTTATTTTGCTTGTAATCCTAAG
CTTTTCGGCTTTAACTGTGCCGGTAACTAAAAAATATTTCCAATATAAATATAATAAGAAGTATGGTATGGCTCTGAAAGAAGACTCGAATGAAACCAGC
AAAAGGGAAGACAGGGAACTTAAAGAAGATATAATGAAATTCTGGATGATGGCTCATACCTGCAACCCCCAGTTCGTGGTTGGCCGTTCAGTTACATGCA
CGGCCGCAGGTGCATTCTGTCTCCTTGGTGCTATGACTTTAGCAGAGGCCATGCTGCGATCTTACTTGATGCCCTGGTCATTCAAATTTTGCACCGGAGA
GTCTGACTATGAGTGGTCGACCATCTTAATTCTTATTACACAGACCATTGCAGTAGGAGTTGGTACTATTGCCCCAGCAATCAGATGGTTCACTGCTGTA
AACTTCAGATGCCCAATCAGAAGGATGAAAAGCGGCAAAAGAAAATGGACAGTAGAAAGGTACTGGATCCAGTTGCTTGTGGAGATTAAAGAGTGCCCAC
TAAGCATACGATTCGAGGACCGGTTTTGCAAGAAATTTGCCCATCATGTTAAAAACAAACTGGTGGACCTCTGTATTGGAATGCAAACGGGAATTGTGTT
GGGAAGCAAAGTGATTCAGTTCATTTCAGTTTACTTCATGATCCAGGTTTTGTTATTCTTTGATTTCTGTAAGAAGTTAAAAACGATGAAACCCAAAAAC
GGCATTTCATCTGACTCGGGATCAGAATCACGATCGACTCCAAAACCAGATCTCAGACGTTACGTTATGCATCTTGAAGGTGAAGACGAGCTAGTTGAGT
TGATGATGAAGAACAACTTTGATGCCACTGATCATTGGCTGCGAAGGGGGGAAAGGAAACAGCCAAAGCATCTCACAGAACTTCTGGAAAAATCAACCTT
TGCAGAAGGATTTAAGGGAGTGAGAGAGTTTGACAGTGACCTAGTTCTCTCTTTAGTTTGTGATGAACCTCCTAACTGTTGGGCTCTTCCTGTAGTAACT
CTGACAGCCATTGCAGTTGCACTTCCAAATGTCAGTGGTAGTTTAATGAAACAGTTGATGCGCAGTGTAAATGAAGGCCTCATGTATGTCAGACTCATAG
AAGATAGCCTGGACGCAAATGGAGAATTGCTTAACATCAGGAAAGCAGCAAGTGTTGCATGGGTAGGAGTCGATCTCTTCCACAAGTGGCTAGATGTGGA
CCTTCGAAAACTGTCCTTCCAAGCAGAAAGCACTAAGGAAATACTCGAGAAACTATCTGATGCTGCAAAGAATAGGTTGGAGGAGTTTAAGAAGACACCC
ATGAATCAATGTCTGAAGGAAGGACCTTCAAAGTGGCCCATCAAGATACTGGCCGCTAATTCCATGTATAGGATAAGCCAAACTCTTCTGCAGAATTGTG
AAAGAAGAAATGGCTTGATCGACGAAAGATTATTTGAAGCTTTAACTGTCATGATCTCTGATATACTGGGCGCTTGTCTAACTAACTTACGGCAGGTCAT
ATTCCACTGTTTGAGCAGGGCTGTCACTGATAGAGAGCATTGTGTACGCAGAGCCGTTTTCATTCTTGGAAAAACTGAAAAGATTCGGAAACTTCTAGAT
CAGCAGCCTATTTCCACTTTAGATCCAGATCAAATGGCCTACATTGATGAGTGGCGTTCAATGCATGATTTGAAGATCTCTTTGCCCTCCATTCCATCTT
CAGCAAAGAGTGAAACGGCCTTATCCACTTCGAGCGACTTGTATATAACCATGGAATGA
AA sequence
>Potri.001G123100.2 pacid=42788723 polypeptide=Potri.001G123100.2.p locus=Potri.001G123100 ID=Potri.001G123100.2.v4.1 annot-version=v4.1
MGKLGCGIDGGLNEAKFSAPIPWIGLYIAVASLACAIAMAADFIRGFRQQKFWFPSKFFSINATSLTIIAVAVKLSVDLNTAMPRRVDQLAKLSSGALLC
TVMGNSMPSLGTMDNNDLYTNIIALGILVVTVIVNTGIQLGTGVIYLHWKEHALIMFLMLILLVILSFSALTVPVTKKYFQYKYNKKYGMALKEDSNETS
KREDRELKEDIMKFWMMAHTCNPQFVVGRSVTCTAAGAFCLLGAMTLAEAMLRSYLMPWSFKFCTGESDYEWSTILILITQTIAVGVGTIAPAIRWFTAV
NFRCPIRRMKSGKRKWTVERYWIQLLVEIKECPLSIRFEDRFCKKFAHHVKNKLVDLCIGMQTGIVLGSKVIQFISVYFMIQVLLFFDFCKKLKTMKPKN
GISSDSGSESRSTPKPDLRRYVMHLEGEDELVELMMKNNFDATDHWLRRGERKQPKHLTELLEKSTFAEGFKGVREFDSDLVLSLVCDEPPNCWALPVVT
LTAIAVALPNVSGSLMKQLMRSVNEGLMYVRLIEDSLDANGELLNIRKAASVAWVGVDLFHKWLDVDLRKLSFQAESTKEILEKLSDAAKNRLEEFKKTP
MNQCLKEGPSKWPIKILAANSMYRISQTLLQNCERRNGLIDERLFEALTVMISDILGACLTNLRQVIFHCLSRAVTDREHCVRRAVFILGKTEKIRKLLD
QQPISTLDPDQMAYIDEWRSMHDLKISLPSIPSSAKSETALSTSSDLYITME

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G47580 ASG7 ALTERED SEED GERMINATION 7, un... Potri.001G123100
[exp]
0 1
AT5G60910 MADS FUL, AGL8 FRUITFULL, AGAMOUS-like 8 (.1.... Potri.001G328600
[exp]
7.74 0.7511
AT3G24255 RNA-directed DNA polymerase (r... Potri.004G185050
[exp]
9.16 0.8087
AT1G68940 Armadillo/beta-catenin-like re... Potri.008G112900
[exp]
23.87 0.7665
AT1G09030 CCAAT NF-YB4 "nuclear factor Y, subunit B4"... Potri.013G019600
[exp]
26.03 0.7900
AT5G23810 AAP7 amino acid permease 7 (.1.2) Potri.011G167200
[exp]
31.93 0.7883
AT1G11050 Protein kinase superfamily pro... Potri.004G084900
[exp]
34.39 0.7634
AT1G76690 OPR2, ATOPR2 ARABIDOPSIS 12-OXOPHYTODIENOAT... Potri.013G103000
[exp]
35.14 0.7089
AT3G15880 WSIP2, TPR4 TOPLESS-RELATED 4, WUS-interac... Potri.018G128000
[exp]
36.27 0.7166
AT5G61010 ATEXO70E2 exocyst subunit exo70 family p... Potri.015G058200
[exp]
46.79 0.6733
AT1G14900 HMGA high mobility group A (.1) Potri.017G129400
[exp]
51.63 0.7107 HMGA901

Potri.001G123100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.