Plant FIBer expression Database

Potri.001G123200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G16530 118 / 2e-30 Family of unknown function (DUF577) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000730
[exp]
157 / 1e-47 AT4G16530 165 / 1e-46 Family of unknown function (DUF577) (.1)
Lus10008510
[exp]
160 / 3e-45 AT4G16570 503 / 3e-169 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 7, protein arginine methyltransferase 7 (.1)
PFAM info
Representative CDS sequence
>Potri.001G123200.3 pacid=42788862 polypeptide=Potri.001G123200.3.p locus=Potri.001G123200 ID=Potri.001G123200.3.v4.1 annot-version=v4.1
ATGGGAGGTCATGGAGGTCTTAACATTCTTCCTCAAAAGAAATGGAATGTTTACAATTACGATAACAGAGAGAAAGTTAGGAAAGATGAAGAAGCTGCTG
CGAGAGATGAGCAACTAAAGCGCGAAGAGGTGAGAAAGCGTGATGCTGAGTTTCGCCTTGAGCGCCTTCGTGCTGCTCGTGGCTTACCTCCCATGCAAAA
ACCTGAGGAGCCAGTGCCTGTGGTGGAAGCTGAGGCTTCCATATCGGAACCTAAATCCAACCACATTAATCTCTTTGAAGGGATTAAGATTTTCGACCCT
GTTATGGGATTGGAGAAAGAACGAGGTGATGAGGGAGAAGGGTCTAAGAAGAAAAGGAAGATGATGAAGAAAGAGGAGGTGAGGATTGTGACTGCAGAGG
ATGAGAAGTATAGGTTGGGATATGGAGTTGCTGGGAAAGGAGTTAAGTTGCCTTGGTACCTTGAGAGGCGGAGTGATGAGGTGAATAATAAGGAGAGGGG
TGAAGATGATGGGTCGACAAGAGGGAAAAAGGAGGTGGGGAAGAAGAGTGGCAAGAAGACTTTGGAAGAGTTAAGGGATGAGAGATTGAAGAGGGAGAAG
CGCGAGAAGGAGAGGGAAAGAGCTTTGTTGGTAGAGAAGAGCCGAAGAGATGGATCTCGTTTGAAGGAGAAAGGATTTTCCAGGAGGTCTGTTTACTGA
AA sequence
>Potri.001G123200.3 pacid=42788862 polypeptide=Potri.001G123200.3.p locus=Potri.001G123200 ID=Potri.001G123200.3.v4.1 annot-version=v4.1
MGGHGGLNILPQKKWNVYNYDNREKVRKDEEAAARDEQLKREEVRKRDAEFRLERLRAARGLPPMQKPEEPVPVVEAEASISEPKSNHINLFEGIKIFDP
VMGLEKERGDEGEGSKKKRKMMKKEEVRIVTAEDEKYRLGYGVAGKGVKLPWYLERRSDEVNNKERGEDDGSTRGKKEVGKKSGKKTLEELRDERLKREK
REKERERALLVEKSRRDGSRLKEKGFSRRSVY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G16530 Family of unknown function (DU... Potri.001G123200
[exp]
0 1
AT1G79200 unknown protein Potri.005G095700
[exp]
3.16 0.8288
AT3G55520 FKBP-like peptidyl-prolyl cis-... Potri.010G201600
[exp]
4.24 0.8011
AT1G59600 ZCW7 ZCW7 (.1) Potri.002G118300
[exp]
4.89 0.7772
AT3G26020 Protein phosphatase 2A regulat... Potri.010G054300
[exp]
4.89 0.7323
AT5G23590 DNAJ heat shock N-terminal dom... Potri.009G138100
[exp]
6.92 0.7615
AT2G46900 unknown protein Potri.014G109500
[exp]
7.34 0.7508
AT3G58090 Disease resistance-responsive ... Potri.006G216000
[exp]
9.38 0.7659
AT4G12040 AtSAP7 stress-associated protein 7, A... Potri.007G078500
[exp]
9.79 0.7903
AT4G18880 HSF AT-HSFA4A ,HSF ... ARABIDOPSIS THALIANA HEAT SHOC... Potri.004G062300
[exp]
11.61 0.7977
AT1G17640 RNA-binding (RRM/RBD/RNP motif... Potri.003G040900
[exp]
11.66 0.7989

Potri.001G123200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.