Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44800 1994 / 0 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1) AT2G25170 570 / 1e-172 CKH2, SSL2, GYM, CHD3, PKL, CHR6 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) AT4G31900 525 / 1e-158 PKR2 PICKLE RELATED 2, chromatin remodeling factor, putative (.1.2) AT2G13370 464 / 4e-134 CHR5 chromatin remodeling 5 (.1) AT3G06400 376 / 5e-109 CHR11 chromatin-remodeling protein 11 (.1.2.3) AT5G18620 372 / 1e-107 CHR17 chromatin remodeling factor17 (.1.2) AT3G06010 362 / 4e-104 ATCHR12 Homeotic gene regulator (.1) AT5G19310 360 / 1e-103 Homeotic gene regulator (.1) AT2G44980 343 / 8e-100 ASG3 ALTERED SEED GERMINATION 3, SNF2 domain-containing protein / helicase domain-containing protein (.1.2) AT5G66750 330 / 4e-96 CHR01, CHA1, SOM1, CHR1, SOM4, DDM1, ATDDM1 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G110100 [exp] 3642 / 0 AT5G44800 1988 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.018G021100 [exp] 586 / 2e-177 AT2G25170 1818 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Potri.006G262200 [exp] 579 / 3e-175 AT2G25170 1826 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Potri.001G253400 [exp] 471 / 6e-136 AT2G13370 2206 / 0.0 chromatin remodeling 5 (.1) Potri.009G047800 [exp] 462 / 3e-133 AT2G13370 2129 / 0.0 chromatin remodeling 5 (.1) Potri.008G205600 [exp] 375 / 9e-109 AT3G06400 1724 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.010G021400 [exp] 373 / 5e-108 AT3G06400 1748 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.014G056700 [exp] 345 / 2e-100 AT2G44980 1149 / 0.0 ALTERED SEED GERMINATION 3, SNF2 domain-containing protein / helicase domain-containing protein (.1.2) Potri.019G129900 [exp] 342 / 2e-100 AT5G66750 1047 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038363 [exp] 2339 / 0 AT5G44800 1916 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Lus10036223 [exp] 2130 / 0 AT5G44800 1780 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Lus10005339 [exp] 582 / 8e-177 AT2G25170 1787 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10041019 [exp] 581 / 2e-176 AT2G25170 1776 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10022423 [exp] 475 / 3e-137 AT2G13370 2250 / 0.0 chromatin remodeling 5 (.1) Lus10009711 [exp] 463 / 2e-134 AT2G13370 2115 / 0.0 chromatin remodeling 5 (.1) Lus10034064 [exp] 360 / 2e-103 AT3G06010 1422 / 0.0 Homeotic gene regulator (.1) Lus10033967 [exp] 369 / 6e-103 AT5G18620 1650 / 0.0 chromatin remodeling factor17 (.1.2) Lus10010522 [exp] 358 / 6e-103 AT3G06010 1358 / 0.0 Homeotic gene regulator (.1) Lus10041735 [exp] 339 / 7e-99 AT5G66750 1069 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0049 [poplar] [flax] Tudor PF00385 [poplar] [flax] Chromo Chromo (CHRromatin Organisation MOdifier) domain CL0390 [poplar] [flax] zf-FYVE-PHD PF00628 [poplar] [flax] PHD PHD-finger CL0023 [poplar] [flax] P-loop_NTPase PF04851 [poplar] [flax] ResIII Type III restriction enzyme, res subunit CL0023 [poplar] [flax] PF06465 [poplar] [flax] DUF1087 Domain of Unknown Function (DUF1087)
Representative CDS sequence Show only first row Show all	>Potri.001G123400.6 pacid=42788068 polypeptide=Potri.001G123400.6.p locus=Potri.001G123400 ID=Potri.001G123400.6.v4.1 annot-version=v4.1 ATGAAGGATAACAGTTCAACAAGTAGTAAAATGATTAGCAGAAACTGGGTCTTGAAGCGAAAACGAAAAAAGATTCTGTATGGACGAGTTGTTTCTACTG GTAAAGAAGATAACTTGGAATCTCCAAGGAATACATCTGCTGCTAAACGCCGGCCAAAGAGTGAACAAAGTTCTGATCTATCTTCATCCAAGAAGAAAGG AAATGATGGGTATTACTATGAATGTGTAATCTGTGATCTTGGTGGCAACTTGTTGTGCTGTGATAGCTGTCCCCGGGTGTACCATCTACAGTGCCTTGAT CCACCTCTTAAGCGCATTCCAATGGGGAAATGGCAATGCCCAAAGTGCTCTCAAAAAAGTGACCCACTGAAGTCCATTAGCCCACTGGGTTCCATTTCAA AGCGTGCAAGAACAAAAATAATCACTACAAATTCTAGAACTGGATTTAAGTCATCTGGCACTGACAAAGTATCTGCGCTTTTCGGAAGCTCCATTGTCTC CAAGCGAAGGTCTTCCAGCAAGGGGAAATCGACTCTAACTGTTGGATCCAAACCCATTGAAAAGGAACCAGATTCGTCCTCAGATGTATTATGTAGCACC AAGTCATGTGATCCATCTGCTGTTAGTTCTGTAGATGGTACTTCATTGCATGTGAACATTGATGATGAAAAGAAATGTGATGCATCTCCAAAAGAGTCAA CTGCAGGGAAGAAAACAATTTCCCTTGCTGATGAACTCTTTTCTCATTCTAAACTTACTGAATCCAAGCCAAATAATGAAGGTTCTGGTGAGAAGCATGT CTTGGCTTGTGATAATGGATCTCCAAGAAAGAAAATTGTTCTTGCAATTGGTGCAGCCTCCGAGAACAGGAAAAGAAAGCTTGAAGGCAATAGTGTGGAC AGTGTTAAGAAGCCCAGGACCAACAAGGGAAAGCGCACCTCCATAAAATATAGACCCAAAGCCAATAATGCAAGTTCTGGAACTAGTAAATTGAACCAGA AACGGAAAACCATTAATCATGAAGTTTCGTTACTTTTGCCAACAGAAGATGTTGAAGTCAAGAACATAGAATTGCAGAAAAAGGACGAGAAGAATCCTGT GGAAGTTGCACAACCATTAGAAGAGTCGTATAAAGCAGAGGTTCATGTGGATGAAACCCAGAAATGTGAGGATATTGTCATGACCGAACTTCAGCAGGTT GATCGGGTATTGGGGTGTCGGATTGAAGGTGAAAATGCAAGCTTGTCATGCTGTACATCTCTGATTTCAAAAAATGACCGGCCTTCTGATGAATTGCTTA TATCAGAGACTGAAAATGGACACTTGGAGGAAAAAGCCGCTGGTGACACATATTCAGATCTCGGGGTTGCTGAAAATCATGTTGAGGGTCATCCTGGTGT TATTGAAAGTTCTGAGAAGGATGAAAGTGTGAAGAATGACATTAGAGTGGATACAATACGTGTATACAGAAGATCTGCTAGCAAAGACTATAAAGGAGGG AACAGCAAGGATTTACTGGGGAAAGATGGAAAAGATTCAGGTTCTGGAGGCATTAGTGGTAAGGATCAAGATGAATCTGCAGTAACAACAGAAGTAATGG TGAAAAGACATGAAAATCCGGTGATTGAAGAAACTACTGATTTTTGTTTGAAAAACTCAGATGCAGATCAAATTTCTGAAGTTTGTGAAATGCATGTCTC TCCTGAAACCAAGGACACAAAAGAAGAAGATATGAAAATCAAAACTTCTAGTTGTGAAAATAAAGTCCCGGAGCCTGCCATGGAAGAGCTAGCATGTGCT CACAAAGACACAACATCATATGAATTCCTAGTTAAGTGGGTAGGGAGGTCTCATATACATAACAGTTGGATCTCAGAATCCCAGCTGAAAGCTCTTGCAA AGAGAAAACTAGAAAATTATAAGGCTAAGTATGGAACAGCTTTGATAAATATCTGTGAGGAAAAGTGGAAGCAGCCCCAGCGAGTAATTGCTCTCCGTGC TTCTGAGGATGGCAGCCGTGAAGCTTTTGTAAAATGGACCGGTCTTCCATATGATGAATGCACTTGGGAAAGTCTGGATGATCCTGTTCTTAAAAAATCA GTTCATCTAATCAATCAGTTCAGTCAGTTTGAGCGCCAGACATTGGAAAAAGATTCTGCGAGGGATGATCTACAAAAAGGGAGGCGTGATGGTCTGCAAA ATGAAATTGCTACTCTGATGGAGCAACCGGAGGAACTAAAAGGAGGTTCCTTGTTTCCTCACCAGCTTGAGGCATTGAATTGGTTGCGTAAGTGTTGGCA TAAATCCAAAAATGTAATACTTGCTGATGAGATGGGGCTGGGGAAAACAGTATCTGCTTGTGCTTTCCTTTCATCTTTGTATTTTGAGTTCAAAGCTTCT CTCCCGTGCTTGGTCTTGGTTCCACTTTCAACAATGCCTAACTGGTTCTCTGAGTTTGCACTGTGGGCTCCCAACTTAAATGTTGTAGAGTACCATGGGT GTGCAAAAGCAAGGGCCATGATTCGCCTGTATGAATGGCATGCTAGTGATCCCAATAAGATGAACAAGAAAACCACTTCCTACAAATTTAATGTTCTTTT AACCACTTACGAAATGGTTCTTGCGGATTCCACTTATTTGCGTGGAGTTCCTTGGGAAGTTCTTGTGGTTGATGAGGGCCATAGACTTAAGAATTCAGGG AGTAAGCTGTTCAGCTTGCTCAACACGTTCTCTTTCCAACACCGTGTTCTTTTGACTGGTACCCCTCTTCAGAATAACATTGGCGAGATGTATAATTTGC TCAATTTCTTACAGCCAGCATCATTTCCTTCTCTAACTTCCTTTGAGGAGAAATTTAATGATCTCACAACAGCTGAAAAGGTCGAAGAATTGAAGAAACT TGTTGCACCACACATGCTTCGAAGGCTTAAAAAGGATGCTATGCAAAATATCCCCCCCAAGACAGAACGGATGGTTCCTGTTGAGTTGTCTTCTATCCAA GCTGAATATTACCGAGCAATGCTAACGAAGAATTATCAAATGTTACGGAATATTGGGAAAGGAGTTGCACAACAATCGATGCTAAACATTGTGATGCAGC TGAGAAAAATTTGCAATCATCCATATCTCATACCAGGTACCGAGCCTGATTCTGGGTCACTAGAATTTCTTCATGAAATGCGAATAAAAGCTTCGGCCAA GTTGACTTTGCTGCATTCCATGCTCAAGATCTTATACAAGGAAGGTCATAGAGTTCTGATTTTTTCACAAATGACCAAGCTTCTTGATATCCTTGAGGAT TATTTGACCATAGAGTTTGGCCCTAAAACATATGAAAGGGTGGATGGTTCTGTATCAGTCTCGGATCGCCAGACAGCAATTGCACGTTTTAACCAAGACA AAAGTCGATTTGTCTTCTTGTTATCAACGCGCTCTTGTGGCCTTGGAATCAATTTAGCAACCGCAGACACTGTCATTATTTATGATTCTGATTTCAACCC ACATGCTGATATCCAAGCTATGAATCGAGCACATCGAATTGGGCAATCCAAAAGACTTCTGGTGTACAGGCTTGTTGTTCGTGCCAGTGTTGAAGAGCGC ATCTTGCAACTTGCTAAAAAAAAACTAATGCTTGATCAGCTCTTTGTCAACAAGTCTGGGTCTCAGAAGGAAGTGGAAGATATTCTACGATGGGGAACAG AAGAGCTTTTTAGTGAATCTTCTAGCATGAATGGAAAAGATAATAGTGACAATAATATCAACAAAGATAAAGATGACACAATAGTAGATCTGGAGCAGAA GCAGAGGAAGAGGAGTGGTGGCCTTGGGGATGTGTACCAAGATAAATGTACAGATGGTGGCAACAAGATTGTGTGGGATGAAAATGCTATATCAAAGTTA CTTGACCGCACAAACCTCCAGTCTGCATCAACTGATGCTGCTGAAGGAGATTTTGAGAATGAAATGCTTGGCTCAGTAAAGTCCTTGGAATGGAATGATG AAACAACAGAAGAGCAAGGGGGAGCTGAATCACTAGTTGTGGTTGATGATACCTGCGGACAAAATCCTGAAAGGAAAGAGGACAATGTGGTAAATGTTAC TGAAGAAAATGAATGGGACAGGCTTTTGCGTTTAAGATGGGAGAAGTATCAAAACGAGGAGGAAGCTGCTCTTGGTCGAGGGAAACGCTTGAGGAAAGCT GTCTCATACAGGGAAGCTTATGCCCCGCATCCAAATGAAACTTTGAATGAGAGTGGTGGTGAAGAGGACCAGGAGCCTGAAGCAGAGCCTGAGCGGGAAT ATACACCAGCTGGAAGAGCTCTAAAGGCAAAATACACTAAGCTTCGCTCTAGACAAAAAGAACGCCTTGCTCAGCGGAATGCAATTGAAGTATTTCGTCC TAATGAGGGGCTTCCTGTACGTGAGTTGGTTCTTCATTGCCCTCCCACCAACGAAATAGACAGGGATCGGGCCATGGAGTTTGCTCAACAAGGCAGAGAG AAGGCGTTTGTAATTAACTTGGAGGATGACGAGTTCAGTCAGCAAGATGCAACAAAGAGAAATGCCGATGCAACCATAAAGTTGGGCCACCTATCTAATC ATAAATTGAGCAGTCATCTGGATCTTTCTATGAACTCTCTTGGACACCCCTCCTCTGACACTATCCTTCCAATTCCCCAAAATCACGGCAGAGGCAATAA AAACTTGCTTTCTTCCAACAATCAGTTACCTGTTCTGGGACTCTGTGCTCCCAATGCTAATCAATTGGATTTGTTGCACAAAAGCTCTTCAAGATCAAAG GGTCAACAAAGCAAGCCAGTGCCTGGACCAGAGTTTCCATTTAGTCTACCTCCTTGCTCTGAAACTTCAATTGAGATGGATATAAAACATCAGGAGCCTA CATCAGACAAGCCAAAATTGCTAGATGCATCAGCTGAGATTTTGCAACCGCGTCTTAAAAATAACTTTGCAGATGGTTGGCACTCGTTTAGTCCGTGTCC ACCTATATCACAAGGGAAGGATTCTGATCACTTGGAAGGTTCCAGTTCTAGTTTTGCTGTTTTCCAGGAAAAGATGTCACTGCCAAACTTTCCTTTTGAT GAGAATTTGTTGTCCAGATTTCCACTTCCTTCCAAGAGCATGCCTAGTAACCATGACTTATTACCAAGCTTGTCACTGGGGAGAAGACTTGAAGCTGTTA ACGACTCTACTCGAGACCTTCCAGCAATGCCATTGTTGCCCAATTTGAAATTTCCCCCTCAAGATGCAACAAGATATAATCAGTTAGAGAGGGAGGTTCC TCCGACACTGGGTTTGGGTCAGATGCCATCTGCTTTTTCATCATTTCCTGAAAACCACAGAAAGGTGCTTGAGAACATAATGATGAGGACTGGCTCTGGA TCAAGTAGCTTGTATAGAAAGAAATCAAAAATAGATGTTTGGTCTGAGGATGAACTTGATTTCCTTTGGGTTGGTGTTCGGAGATATGGAAGGGGTAATT GGGATGCCATTCTTAGAGACCCCAGGTTAAAATTCTCGAAGTACAAAACTTCAGAAGATTTAGCAGCTAGGTGGGAGGAGGAACAATTCAAGTTCTTGGA TGGGTCTGCCTTTCCATTGCCAAAGATGATGAAGCCAACAAAGTCCTCCAAATCATCCTTGTTCCCAAGCATTCCTGAGGGAATGATGACACGGGCTTTG CATGGAAGCAGACTCGTTACCCCGTCAAAGTTTCAGTCACATCTGACGGACATGAAATTGGGTTTTGGTGATCTGTCTTCTAGCCTACCACATCTTGAGC CGCTGGATCAATTTAGTTTGCAGAATGAGCATTTTGGACCAATTCCAACTTGGAATTCGGATGAGTTGCGGGTAAGTTTTGTTGGAGATTCTTCAGTGGG ACCATCACATGTTTCCTCTGAAAAACCATTTCTGCTCAATTCTTTTGGAGCAAGCACCTTGGCAACTCTTGGATTGAATTCCTCAAGCAACTTTGATTTA CAGCGAAGAGAAGAGGAATACAATACCATGAAGTATGGGAAATCACCTAGCCTTCTAGATAGATCATTACATATATTGCACGATTCCCATAACAATGTGG GAAGTGGCGAATTAAGCAGTTCAGCATTGTTCTTGGACCCAAATAAAGTGTTGAATCCATTCCATTCAAAGGGCAAAGAAGTAGTTGGAAGCAGTTCGTC GAACAAGCTGCCTCATTGGCTTCGGGAAGCTGTAAGTGCTCCTCCTGTCAAACCAGCTATTCCTGACCTGCCACCCACTGTATCAGCAATAGCTCAATCA GTTCGTGTGCTATATGGAGAAAATCAGCCAACTATTCCTCCTTTTATTGTACCCGGTCCACCTCCCTCCCAACCAAAGGATCCAAGAAGGATTTTGAGGA AGAAAAAGAAGCGGAGGTCACATATGTTCAGGCAGTTCCCACTAGATATTGGGGGAAGTAGCCAGGATTTTAGAAATAGCATCCATGGCAGTAATGTTGC TTCGACCTCTATCCCACAGGTCCCACCATTAGTTCATGAAACTTCGGGCCCATGGAATGAATCTGACTTTAACCTGCCTCTTCCCAGTTTACACAAGATG AATTCGTTGACTTCATCTGCTTATTTAAACATACAGAAGAAAACTACCATGGGATTGTCCCCCTCCCCTGAAGTTCTTCAATTGGTAGCATCCTGTGTTG CTCCAGGCCCTCATTTATCCTCTGGTTCTGGTGCAACAAGCGCGAGCCTCCATGAAAGTAAAGTACCATTGCCAAAATCTCCTGACCAAGTTGGAATTTC AGATCCACTAGGTGCTTTGGAAGAACCTATGGACACAGAAAGGTCGCCCCCTCAGGTGCAGTGCATTCCAGAGAAGAGACTGGACCAACCTGATAGTGGC GACTCTAGCAAGACCGAGTCAGATCTTTCTCCGATCAAACATCCTGATGTAGAGGACATATCTTCTGAGGGAACTCTATCAGATCATCCTGTGAGTGACC AAGAACCATAG
AA sequence Show only first row Show all	>Potri.001G123400.6 pacid=42788068 polypeptide=Potri.001G123400.6.p locus=Potri.001G123400 ID=Potri.001G123400.6.v4.1 annot-version=v4.1 MKDNSSTSSKMISRNWVLKRKRKKILYGRVVSTGKEDNLESPRNTSAAKRRPKSEQSSDLSSSKKKGNDGYYYECVICDLGGNLLCCDSCPRVYHLQCLD PPLKRIPMGKWQCPKCSQKSDPLKSISPLGSISKRARTKIITTNSRTGFKSSGTDKVSALFGSSIVSKRRSSSKGKSTLTVGSKPIEKEPDSSSDVLCST KSCDPSAVSSVDGTSLHVNIDDEKKCDASPKESTAGKKTISLADELFSHSKLTESKPNNEGSGEKHVLACDNGSPRKKIVLAIGAASENRKRKLEGNSVD SVKKPRTNKGKRTSIKYRPKANNASSGTSKLNQKRKTINHEVSLLLPTEDVEVKNIELQKKDEKNPVEVAQPLEESYKAEVHVDETQKCEDIVMTELQQV DRVLGCRIEGENASLSCCTSLISKNDRPSDELLISETENGHLEEKAAGDTYSDLGVAENHVEGHPGVIESSEKDESVKNDIRVDTIRVYRRSASKDYKGG NSKDLLGKDGKDSGSGGISGKDQDESAVTTEVMVKRHENPVIEETTDFCLKNSDADQISEVCEMHVSPETKDTKEEDMKIKTSSCENKVPEPAMEELACA HKDTTSYEFLVKWVGRSHIHNSWISESQLKALAKRKLENYKAKYGTALINICEEKWKQPQRVIALRASEDGSREAFVKWTGLPYDECTWESLDDPVLKKS VHLINQFSQFERQTLEKDSARDDLQKGRRDGLQNEIATLMEQPEELKGGSLFPHQLEALNWLRKCWHKSKNVILADEMGLGKTVSACAFLSSLYFEFKAS LPCLVLVPLSTMPNWFSEFALWAPNLNVVEYHGCAKARAMIRLYEWHASDPNKMNKKTTSYKFNVLLTTYEMVLADSTYLRGVPWEVLVVDEGHRLKNSG SKLFSLLNTFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPSLTSFEEKFNDLTTAEKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVELSSIQ AEYYRAMLTKNYQMLRNIGKGVAQQSMLNIVMQLRKICNHPYLIPGTEPDSGSLEFLHEMRIKASAKLTLLHSMLKILYKEGHRVLIFSQMTKLLDILED YLTIEFGPKTYERVDGSVSVSDRQTAIARFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEER ILQLAKKKLMLDQLFVNKSGSQKEVEDILRWGTEELFSESSSMNGKDNSDNNINKDKDDTIVDLEQKQRKRSGGLGDVYQDKCTDGGNKIVWDENAISKL LDRTNLQSASTDAAEGDFENEMLGSVKSLEWNDETTEEQGGAESLVVVDDTCGQNPERKEDNVVNVTEENEWDRLLRLRWEKYQNEEEAALGRGKRLRKA VSYREAYAPHPNETLNESGGEEDQEPEAEPEREYTPAGRALKAKYTKLRSRQKERLAQRNAIEVFRPNEGLPVRELVLHCPPTNEIDRDRAMEFAQQGRE KAFVINLEDDEFSQQDATKRNADATIKLGHLSNHKLSSHLDLSMNSLGHPSSDTILPIPQNHGRGNKNLLSSNNQLPVLGLCAPNANQLDLLHKSSSRSK GQQSKPVPGPEFPFSLPPCSETSIEMDIKHQEPTSDKPKLLDASAEILQPRLKNNFADGWHSFSPCPPISQGKDSDHLEGSSSSFAVFQEKMSLPNFPFD ENLLSRFPLPSKSMPSNHDLLPSLSLGRRLEAVNDSTRDLPAMPLLPNLKFPPQDATRYNQLEREVPPTLGLGQMPSAFSSFPENHRKVLENIMMRTGSG SSSLYRKKSKIDVWSEDELDFLWVGVRRYGRGNWDAILRDPRLKFSKYKTSEDLAARWEEEQFKFLDGSAFPLPKMMKPTKSSKSSLFPSIPEGMMTRAL HGSRLVTPSKFQSHLTDMKLGFGDLSSSLPHLEPLDQFSLQNEHFGPIPTWNSDELRVSFVGDSSVGPSHVSSEKPFLLNSFGASTLATLGLNSSSNFDL QRREEEYNTMKYGKSPSLLDRSLHILHDSHNNVGSGELSSSALFLDPNKVLNPFHSKGKEVVGSSSSNKLPHWLREAVSAPPVKPAIPDLPPTVSAIAQS VRVLYGENQPTIPPFIVPGPPPSQPKDPRRILRKKKKRRSHMFRQFPLDIGGSSQDFRNSIHGSNVASTSIPQVPPLVHETSGPWNESDFNLPLPSLHKM NSLTSSAYLNIQKKTTMGLSPSPEVLQLVASCVAPGPHLSSGSGATSASLHESKVPLPKSPDQVGISDPLGALEEPMDTERSPPQVQCIPEKRLDQPDSG DSSKTESDLSPIKHPDVEDISSEGTLSDHPVSDQEP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Potri.001G123400 [exp]	0	1
AT4G00450		CCT, CRP	CRYPTIC PRECOCIOUS, CENTER CIT...		Potri.002G159900 [exp]	1.00	0.9453	Pt-CRP.3
AT4G30990			ARM repeat superfamily protein...		Potri.001G318800 [exp]	2.44	0.9260
AT5G09950			Tetratricopeptide repeat (TPR)...		Potri.013G129500 [exp]	2.82	0.9319
AT3G50370			unknown protein		Potri.005G137700 [exp]	3.46	0.9224
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Potri.001G004200 [exp]	3.46	0.9204
AT3G45830			unknown protein		Potri.009G026100 [exp]	3.87	0.9207
AT5G56250		HAP8	hapless 8 (.1.2)		Potri.001G472400 [exp]	4.89	0.8793
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Potri.013G006000 [exp]	5.74	0.8978	MOM.2,1
AT5G07980			dentin sialophosphoprotein-rel...		Potri.015G056400 [exp]	6.92	0.8973
AT5G16680			RING/FYVE/PHD zinc finger supe...		Potri.013G077900 [exp]	7.34	0.8883

Compare expression of checked genes

Potri.001G123400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.