Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35050 660 / 0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G79570 628 / 0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G16270 619 / 0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) AT1G04700 502 / 6e-158 PB1 domain-containing protein tyrosine kinase (.1) AT3G24715 496 / 5e-155 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT5G57610 458 / 2e-141 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT3G46920 458 / 3e-140 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G67890 202 / 8e-54 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT5G49470 195 / 2e-53 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT1G73660 198 / 1e-51 protein tyrosine kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G110000 [exp] 1421 / 0 AT2G35050 672 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.005G095200 [exp] 1145 / 0 AT1G79570 641 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.007G069500 [exp] 1115 / 0 AT1G16270 994 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) Potri.001G052000 [exp] 499 / 4e-156 AT1G04700 721 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.003G176100 [exp] 496 / 3e-155 AT1G04700 725 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.006G170700 [exp] 468 / 1e-144 AT5G57610 1087 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.006G190200 [exp] 465 / 2e-140 AT3G46920 652 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.018G095800 [exp] 456 / 4e-140 AT5G57610 1075 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.018G114300 [exp] 453 / 3e-136 AT3G46920 646 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031173 [exp] 648 / 0 AT1G79570 963 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10031749 [exp] 647 / 0 AT1G16270 703 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) Lus10038160 [exp] 501 / 1e-166 AT3G24715 527 / 2e-179 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10001315 [exp] 467 / 9e-150 AT5G57610 657 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10040006 [exp] 473 / 9e-145 AT3G46920 604 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10006977 [exp] 467 / 1e-144 AT5G57610 1048 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10019577 [exp] 474 / 4e-144 AT3G46920 606 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10025941 [exp] 404 / 9e-121 AT3G24715 424 / 2e-129 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10031750 [exp] 348 / 7e-109 AT1G79570 334 / 1e-104 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10037772 [exp] 195 / 4e-51 AT3G06620 919 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00564 [poplar] [flax] PB1 PB1 domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.001G123500.2 pacid=42791694 polypeptide=Potri.001G123500.2.p locus=Potri.001G123500 ID=Potri.001G123500.2.v4.1 annot-version=v4.1 ATGGACAGGAATCTGGGGAAAGGCATGACAGATCAGCAGAAAAACTATGAACAAGTTCGATATAATAACATGGAAGCTAGAAATGAAGGGCTGGGGTCTG TAAACCAAAGGTTTTTTCATGATCCATCAGCTAATATTAATACTAACATGCGACCTCCTGACTACAACATGTCAATTGGAGCTAGGCCTGTGCTAAATTA CTCCATTCAGACTGGTGAGGAATTCGCTCTTGAATTTATGCGGGAGAGGGTGAACCCCAGGCAACAGCTCTTTCCAAATGCTTACGTTGATCCTAATAGC ACAACTAGCTATATGGAACTAAAGGGCATGTTGGGAATATCTCATACGGGTTCGGAAAGTGGGCCTGACATCTCTACGATAAGCACAGTAGAAAAAGCCC GGAACCAGGAGTTTGACCGGAAGGGATCTTCTGTGCATGAAGACCAAAGTTATTATGATCCTGTCCGACCGGTACCACGAACCTCATCAAGAAATGACAG CAGTCGAGGAATTCATGGTTATACATCTTCAGGAGCCTCTGATAGTTCATCATCAAAGGTGAAGTTTCTCTGCAGCTTCGGTGGTACAATTTTGCCTCGT CCGAGTGATGGAAAGCTGAGATATGTTGGGGGTGAAACACGCATTATCCGGATAAGCAAGAATATTTCTTGGCAGGAGCTTATGCAGAAAACTTTGGCAA TTTACAATGAATCTCACACTATAAAATATCAACTTCCTGGTGAAGATCTTGACGCTTTGGTTTCTGTATCCTGTGATGAGGATCTTCAGAACATGATGGA AGAATGCAATGTATCAGAAGATGGGGGATCGAAGAAGCCTAGGATGTTCTTGTTTTCTAGCAATGATCTAGAGGACTCCCAATTTGGCCTGGGAAGTGGA GAGGGTGAGAATTCTGAGATTCAATATGTAGTTGCTGTAAATGGTATGGACTTGGGTTCAAGGAAGAATTCAATTAATCTGGTAAGCGCATCAGGGAACA ATTTGGATGAGTTACTCAGTCTTAATGTTGAGAGGGGCAGCAGTGGAGTTGCAGCTCAATTAACTGGAAGTAATGCTCCATCTTCAGCTGTTAATATGCT GCCTTCAACAACCCAATCTTCTCAACCAGCACTGACGAGTTCATCTAGTGCCCATGAATCTAATTCACAGCCTTACCATGGCCAGAAGATGCATCATGGA GATGCCAGCCAGCATCCAGTGTCCTCCATGCAACCTATGGAGAGCTTCCTTCAGATGGATGAAAAGGGGACCAATCCATTGTCGGGCCCAATTCAGTATG GTTTTGGCTCACATCTCCCTATCCATGCAATGGTTGGGGAAAATCTAATGGGAGTGCCTTTCCGCATGTATCCAACTCAACAGGGGGTTTTGGCAGAAGA GAAACCGTACAATGGCTTTCATGTGCAAAATGCAGAAGCATCTGTAAAGGATGCAAAACTGAAAAGAGAGAGCTCAGGACACAAAATAAATGAACCTGAG AAAGTTCAAACTCTGGATAAGGAGGCAAGAATAAAGGAATTGAAAATGAAACGAGATGATTCATTCCAGAAGCTTAATGAAACTGTTAAAATTCAGGCAG TGGAAAATGATACCGTTTCCTTGCATCCATATGATAGTTCCATTCCAAATTATACTTCTAGAGAAGAAGTATTGGTTGCCAATTCAACACCAGAAGTAGG ATCACCTCTGCTGCTTATGAAAAATAATAAAAGCCCCCATGAACCTGTACTGAATTCGATGTCCACTGAAACTGTGACCGAAGGGATAAAGAATAATGGG GATGACCATTTTCACTCATCTGGTGATCCATTTGCCCCAGGATATGGGGGTTCTGAGGCTGATCCAACAGATTTTAGCTACCTCGAACCATCTGTGGCTC CTCATCGGGTTTTTCATTCTGAGCGAATTCCCAGGGAGCAGGCAGAATTAAATCGCTTGTCAAAATCGGAGGATTCCTCTGATCCTCAGATTCTAATAAC TCAAGCACGTTCTGGTTGTTCTCAACCACTTATAGAATCAATTGATAAGTTGCACGAAGGAAATGTGGCTTCCCAGACTGACCAGTCCCACCCATCTGCA AAATTGTGTTATGCAAAACCTCAGACTGTTGAAGATGGACTTGCACAGTTTGAGAAGTATAAAGAATTTGCTGATAACATCGGTACAGTAAATCCCAGCA TTGCTCAAGGTCTTGGGTCAAATGTGCAGAAATCTGACTCAAGACGTGTTGTTTTTAATCCAGTGGATGATTATGAAGGTTTCCAGGTTAAAGGCAACTA TACTGATCTCTCTATCAATGATAACGAAACAGTTGGGTTGACACATCCAACAGCAAGTCAGGGAACTTCCAGTAAGCACCCAGAAGATCCTGCTTTGGGG CCTCCAGAGTTTGAAAGAACTGAGACTGTTTCTGACAATAATAATGGGAACAACACTAAGGTGAATGTGCAGCCTTTGGCATGGACAGAGAGCCCAGTGA GAGCTGTATCTGAGGGGGATCCCAGCATTGGTGTTGGCACTCTTGAGAAGAAAGACATACGAATCGATATAAATGACCGGTTTCGTCCTGATATCCTCTC TGATATTTTCTCACAAGCCAAAATCCATGAGAATGTGGTCAGTCCAATTGTTGATGGAGCGGGCTTGAGCTTGAACATGGAGAATCATGATCCGAAACAC TGGTCTTACTTTCGGAAATTGCAAGATCAGTTTGTTAGGAAAGATGTTTCCCTTATAGACCAAGACCATTTGGGTTACTTATCCTCCCTTACAAATGATG AAGGAGGGACGCTCATTGATTATAGTTATCCACCTTTAAGGTCTGATGGAGTTGCCTTGCCTCACATTGAGGAAGATGTTCAACAAGAGACATCTGGTGT TGTTGGGCTGAACACCATGGATTCCCATGCAGATTATGGTCATTTTGAGCTGAAGGAAACTGAGAGTGCGCAATTGGATGGGGTGAATGCTAGAATACCA GAATCAGAGTATGAGGGTGGGAAGTTGGACATTCGAAACACCGGTGCACATCTTGTTGACCTTTCCTCAGGAGAGTTTGATATTAGCACCTTGCAGATCA TAAAAAATGAAGACTTGGAAGAGTTGAAAGAATTGGGGTCTGGCACTTTTGGTACTGTTTATCATGGAAAATGGAGGGGTACGGATGTTGCTATTAAGCG TATAAAAAAGAGCTGTTTCACAGGCCGTTCATCGGAACAAGAAAGATTGACCGTGGAGTTCTGGCGTGAAGCTGAAATTCTCTCAAAGCTTCACCACCCC AATGTAGTTGCATTTTATGGAGTGGTTCAGGATGGGCCCGGAGGAACACTTGCCACTGTGGCAGAGTTCATGGTAAATGGCTCTCTTAGACATGTTCTAC TTAGCAAGGACAGGCATCTTGATCATCGTAAGCGTCTCATTATTGCAATGGATGCAGCTTTTGGAATGGAATATTTGCATTCAAAGAACATTGTGCATTT TGATTTGAAATGTGACAACTTGCTTGTCAACCTGAAAGATCCTTTACGACCTATTTGCAAGGTAGGTGATTTTGGTTTGTCAAAAATCAAAAGGAATACC TTGGTTACTGGTGGTGTAAGGGGAACTCTTCCATGGATGGCTCCAGAACTCCTGAATGGTAGCAGCAGTAAGGTTTCTGAAAAGGTTGATGTGTTCTCTT TCGGCATTGTCTTATGGGAGATTCTCACTGGTGAAGAGCCTTATGCCAATATGCATTACGGAGCAATCATAGGAGGCATAGTTAATAACACTCTGAGACC ACCTGTACCGAGCTTTTGTGACTCTGAATGGAGATTGCTAATGGAGCAGTGTTGGGCACCCGATCCCTTGGCCCGTCCATCATTCACAGAGATTACCAGA CGCTTACGTGTCATGTCAGCAGCATGTCAAACTAAACAGATACCCAAGTAG
AA sequence Show only first row Show all	>Potri.001G123500.2 pacid=42791694 polypeptide=Potri.001G123500.2.p locus=Potri.001G123500 ID=Potri.001G123500.2.v4.1 annot-version=v4.1 MDRNLGKGMTDQQKNYEQVRYNNMEARNEGLGSVNQRFFHDPSANINTNMRPPDYNMSIGARPVLNYSIQTGEEFALEFMRERVNPRQQLFPNAYVDPNS TTSYMELKGMLGISHTGSESGPDISTISTVEKARNQEFDRKGSSVHEDQSYYDPVRPVPRTSSRNDSSRGIHGYTSSGASDSSSSKVKFLCSFGGTILPR PSDGKLRYVGGETRIIRISKNISWQELMQKTLAIYNESHTIKYQLPGEDLDALVSVSCDEDLQNMMEECNVSEDGGSKKPRMFLFSSNDLEDSQFGLGSG EGENSEIQYVVAVNGMDLGSRKNSINLVSASGNNLDELLSLNVERGSSGVAAQLTGSNAPSSAVNMLPSTTQSSQPALTSSSSAHESNSQPYHGQKMHHG DASQHPVSSMQPMESFLQMDEKGTNPLSGPIQYGFGSHLPIHAMVGENLMGVPFRMYPTQQGVLAEEKPYNGFHVQNAEASVKDAKLKRESSGHKINEPE KVQTLDKEARIKELKMKRDDSFQKLNETVKIQAVENDTVSLHPYDSSIPNYTSREEVLVANSTPEVGSPLLLMKNNKSPHEPVLNSMSTETVTEGIKNNG DDHFHSSGDPFAPGYGGSEADPTDFSYLEPSVAPHRVFHSERIPREQAELNRLSKSEDSSDPQILITQARSGCSQPLIESIDKLHEGNVASQTDQSHPSA KLCYAKPQTVEDGLAQFEKYKEFADNIGTVNPSIAQGLGSNVQKSDSRRVVFNPVDDYEGFQVKGNYTDLSINDNETVGLTHPTASQGTSSKHPEDPALG PPEFERTETVSDNNNGNNTKVNVQPLAWTESPVRAVSEGDPSIGVGTLEKKDIRIDINDRFRPDILSDIFSQAKIHENVVSPIVDGAGLSLNMENHDPKH WSYFRKLQDQFVRKDVSLIDQDHLGYLSSLTNDEGGTLIDYSYPPLRSDGVALPHIEEDVQQETSGVVGLNTMDSHADYGHFELKETESAQLDGVNARIP ESEYEGGKLDIRNTGAHLVDLSSGEFDISTLQIIKNEDLEELKELGSGTFGTVYHGKWRGTDVAIKRIKKSCFTGRSSEQERLTVEFWREAEILSKLHHP NVVAFYGVVQDGPGGTLATVAEFMVNGSLRHVLLSKDRHLDHRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKRNT LVTGGVRGTLPWMAPELLNGSSSKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPPVPSFCDSEWRLLMEQCWAPDPLARPSFTEITR RLRVMSAACQTKQIPK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35050			Protein kinase superfamily pro...		Potri.001G123500 [exp]	0	1
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Potri.010G150000 [exp]	1.41	0.8928
AT4G24200			Transcription elongation facto...		Potri.002G020000 [exp]	3.16	0.8699
AT5G44750		ATREV1, REV1	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.009G094400 [exp]	4.89	0.8839
AT4G12070			unknown protein		Potri.003G207600 [exp]	6.92	0.8529
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Potri.006G011701 [exp]	6.92	0.8580
AT5G27030		TPR3	TOPLESS-related 3 (.1.2)		Potri.005G021700 [exp]	7.48	0.8703
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Potri.015G072800 [exp]	8.36	0.8614
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Potri.012G077500 [exp]	8.48	0.8677
AT1G80000			CASC3/Barentsz eIF4AIII bindin...		Potri.001G178900 [exp]	8.83	0.8793
AT4G27190			NB-ARC domain-containing disea...		Potri.019G036875 [exp]	9.00	0.8621

Compare expression of checked genes

Potri.001G123500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.