Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45332 1337 / 0 Translation elongation factor EFG/EF2 protein (.1) AT2G45030 1331 / 0 Translation elongation factor EFG/EF2 protein (.1) AT1G62750 574 / 0 ATSCO1, ATSCO1/CPEF-G SNOWY COTYLEDON 1, Translation elongation factor EFG/EF2 protein (.1) AT1G56070 142 / 8e-35 LOS1, AT1G56075.1 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT5G13650 109 / 1e-24 SVR3 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) AT5G39900 107 / 6e-24 Small GTP-binding protein (.1) AT5G08650 103 / 8e-23 Small GTP-binding protein (.1) AT2G31060 101 / 5e-22 EMB2785 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) AT3G22980 87 / 2e-17 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT3G12915 77 / 4e-14 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G109900 [exp] 1492 / 0 AT1G45332 1330 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Potri.003G113500 [exp] 585 / 0 AT1G62750 1310 / 0.0 SNOWY COTYLEDON 1, Translation elongation factor EFG/EF2 protein (.1) Potri.017G079800 [exp] 108 / 3e-24 AT5G39900 999 / 0.0 Small GTP-binding protein (.1) Potri.001G305300 [exp] 102 / 3e-22 AT5G08650 1063 / 0.0 Small GTP-binding protein (.1) Potri.013G123700 [exp] 102 / 4e-22 AT2G31060 1084 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) Potri.006G053000 [exp] 100 / 8e-22 AT5G13650 1123 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Potri.005G098100 [exp] 92 / 4e-19 AT1G56070 1648 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.007G065600 [exp] 89 / 4e-18 AT1G56070 1620 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.007G065700 [exp] 89 / 5e-18 AT1G56070 1623 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018604 [exp] 1353 / 0 AT2G45030 1343 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Lus10039840 [exp] 1288 / 0 AT2G45030 1289 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Lus10004326 [exp] 578 / 0 AT1G62750 1332 / 0.0 SNOWY COTYLEDON 1, Translation elongation factor EFG/EF2 protein (.1) Lus10028909 [exp] 575 / 0 AT1G62750 1334 / 0.0 SNOWY COTYLEDON 1, Translation elongation factor EFG/EF2 protein (.1) Lus10031201 [exp] 115 / 3e-26 AT1G56070 1415 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10035968 [exp] 101 / 5e-22 AT5G08650 1102 / 0.0 Small GTP-binding protein (.1) Lus10007535 [exp] 101 / 6e-22 AT5G13650 1121 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Lus10039896 [exp] 101 / 6e-22 AT2G31060 976 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) Lus10002179 [exp] 100 / 9e-22 AT2G31060 1036 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) Lus10007250 [exp] 99 / 3e-21 AT5G39900 1080 / 0.0 Small GTP-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00009 [poplar] [flax] GTP_EFTU Elongation factor Tu GTP binding domain CL0437 [poplar] [flax] EF-G_C PF00679 [poplar] [flax] EFG_C Elongation factor G C-terminus CL0575 [poplar] [flax] EFTPs PF03144 [poplar] [flax] GTP_EFTU_D2 Elongation factor Tu domain 2 CL0329 [poplar] [flax] S5 PF03764 [poplar] [flax] EFG_IV Elongation factor G, domain IV CL0437 [poplar] [flax] EF-G_C PF14492 [poplar] [flax] EFG_III Elongation Factor G, domain III
Representative CDS sequence Show only first row Show all	>Potri.001G123600.1 pacid=42787877 polypeptide=Potri.001G123600.1.p locus=Potri.001G123600 ID=Potri.001G123600.1.v4.1 annot-version=v4.1 ATGACCCGATTCCAAAATGGATCACGCCTCCTCTCCTACACCTTCTCCCGCTCCAAAACGAAGTCCTCAGTGTCTCCAACCACCGCTCTCCTCCAGGGCA ACTTCCAAATCCAGCACTCCCGCCACTTCTCCAACCTCGCAAGCGCCACCACAAAAGAAGAAAAGGAGCCATGGTGGAAGGACTCGATGGACCGATTAAG AAATATTGGTATCTCAGCTCATATCGATTCCGGTAAAACCACACTCACTGAACGCATACTGTTTTACACTGGTCGAATTCACGAGATTCATGAGGTTCGC GGCCGTGATGGCGTTGGGGCCAAGATGGATTCCATGGATTTGGAGAGAGAGAAAGGGATCACTATTCAATCCGCTGCTACTTACTGCACTTGGAATGGAT ATCAGGTGAATATAATTGATACACCAGGACATGTGGATTTTACAATAGAGGTGGAGAGGGCACTGAGAGTGTTGGATGGTGCAATTCTGGTTTTGTGTAG TGTGGGCGGAGTGCAAAGTCAGTCTATTACTGTGGATAGGCAAATGAGGAGATACGAGGTGCCTAGGCTTGCTTTTATTAATAAACTTGATCGAATGGGA GCTGATCCTTGGAAAGTTTTGAACCAGGCAAGGTCTAAACTAAGACATCATAGTGCAGCAGTTCAAGTTCCAATTGGGTTGGAAGAGGATTTTCAAGGCC TTATCGATCTTGTAAAAATGAAAGCTTATTATTTCCATGGCTCAAATGGTGAAAAAATTGTCACTGCAGAAATACCAGTTGAGATTGAGGCCTTGGCTGC AGAAAAACGGCGTGAACTAATAGAAACAGTTTCTGAAGTTGATGATAAACTTGCAGATGCTTTTCTCGCAGATGAATCTATTTCAACCTCTGACCTTGAG GAGGCAATTCGCAGGGCTACTGTAGCAAAGAAATTTGTTCCTGTATTCATGGGCAGTGCATTCAAGAACAAGGGAGTGCAGCCACTTTTAGATGGTGTAC TTAGCTATTTGCCTTGTCCCCTTGAAGTTAGTAACTATGCTCTTGACCAAACCAAGGATGAAGAGAAGGTTGTCTTGTCTGGAACTCCAGATGGACCACT TGTGGCATTGGCTTTTAAATTAGAAGAAGGGCGTTTTGGTCAGTTGACATATCTAAGAATCTATGAGGGTGTAATTCGCAAGGGTGATTTTATAGTTAAT GTTAACACAGGCAAGAAGATCAAGGTTCCTCGCTTGGTTCGGATGCACTCTAATGAAATGGAGGACATTCAAGAGGCACATGTTGGGCAAATAGTTGCTG TATTTGGTGTTGATTGTGCTTCAGGTGATACTTTCACAGATGGATCAGTTAGATACACTATGACATCTATGAATGTCCCTGAGCCAGTTATGTCACTGGC CATTCAACCAGTTTCAAAAGACTCCGGAGGACAATTTTCAAAAGCTTTGAATCGTTTTCAGAAAGAGGATCCCACTTTCCGTGTTGGCTTGGATCCTGAG AGTGCTCAGACCATAATTTCTGGAATGGGAGAGTTGCATTTGGACATATATGTGGAACGGATTAGGAGAGAGTACAAGGTTGATGCAAGTGTTGGGAAAC CTCGTGTGAACTTCAGGGAAACCATTACTCAGCGTGCTCAATTTGATTATTTACATAAGAAGCAAAGTGGAGGGCAAGGACAATATGGACGAGTATGCGG GTACATTGAGCCAATTCCACAAGGGTCAATGACTAAGTTCGAGTTTGATAACATGATCGTGGGACAGGTTATACCATCAAATTTTATTCCTGCAATTGAG AAGGGCTTCAAAGAAGCTGCCAATTCTGGTTCTTTAATAGGGCACCCGGTAGAAAATCTTCGAATTGCTTTGACTGATGGTGCTGCCCATGCTGTGGATT CTAGCGAACTTGCATTTAAATTAGCAGCAATATATGCTTTTAGACAGTGTTACGTTGCTGCAAAACCTGTGATACTGGAACCTGTAATGCTGGTGGAACT GAAAGTACCAACAGAGTTTCAGGGTACAGTTGCAGGTGACATTAACAAGAGGAAAGGTGTGATAGTTGGAAATGACCAGGATGGGGATGACTCTATAATA ACAGCCCATGTGCCTTTGAACAATATGTTTGGTTACTCGACTGCTCTACGTTCAATGACGCAGGGGAAAGGGGAATTCACAATGGAATATAAAGAACATT CAGCTGTCTCTCAGGATGTGCAAATGCAATTGGTAAACACCTACAAGGCCAGCAAGACAGCTGAATAG
AA sequence Show only first row Show all	>Potri.001G123600.1 pacid=42787877 polypeptide=Potri.001G123600.1.p locus=Potri.001G123600 ID=Potri.001G123600.1.v4.1 annot-version=v4.1 MTRFQNGSRLLSYTFSRSKTKSSVSPTTALLQGNFQIQHSRHFSNLASATTKEEKEPWWKDSMDRLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVR GRDGVGAKMDSMDLEREKGITIQSAATYCTWNGYQVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG ADPWKVLNQARSKLRHHSAAVQVPIGLEEDFQGLIDLVKMKAYYFHGSNGEKIVTAEIPVEIEALAAEKRRELIETVSEVDDKLADAFLADESISTSDLE EAIRRATVAKKFVPVFMGSAFKNKGVQPLLDGVLSYLPCPLEVSNYALDQTKDEEKVVLSGTPDGPLVALAFKLEEGRFGQLTYLRIYEGVIRKGDFIVN VNTGKKIKVPRLVRMHSNEMEDIQEAHVGQIVAVFGVDCASGDTFTDGSVRYTMTSMNVPEPVMSLAIQPVSKDSGGQFSKALNRFQKEDPTFRVGLDPE SAQTIISGMGELHLDIYVERIRREYKVDASVGKPRVNFRETITQRAQFDYLHKKQSGGQGQYGRVCGYIEPIPQGSMTKFEFDNMIVGQVIPSNFIPAIE KGFKEAANSGSLIGHPVENLRIALTDGAAHAVDSSELAFKLAAIYAFRQCYVAAKPVILEPVMLVELKVPTEFQGTVAGDINKRKGVIVGNDQDGDDSII TAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHSAVSQDVQMQLVNTYKASKTAE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G45332			Translation elongation factor ...		Potri.001G123600 [exp]	0	1
AT5G09840			Putative endonuclease or glyco...		Potri.001G307700 [exp]	2.00	0.9309
AT3G49890			unknown protein		Potri.001G172500 [exp]	2.82	0.8986
AT5G04050			RNA-directed DNA polymerase (r...		Potri.006G043650 [exp]	3.00	0.9106
AT4G21705			Tetratricopeptide repeat (TPR)...		Potri.011G120900 [exp]	3.46	0.8953
AT3G12770		MEF22	mitochondrial editing factor ...		Potri.010G063900 [exp]	3.74	0.9158
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Potri.010G145150 [exp]	4.69	0.8815
AT5G09840			Putative endonuclease or glyco...		Potri.019G004000 [exp]	4.89	0.8808
AT2G20710			Tetratricopeptide repeat (TPR)...		Potri.013G132700 [exp]	5.09	0.8784
AT3G47840			Tetratricopeptide repeat (TPR)...		Potri.007G021700 [exp]	6.70	0.8981
AT4G32430			Pentatricopeptide repeat (PPR)...		Potri.017G042100 [exp]	8.06	0.8286

Compare expression of checked genes

Potri.001G123600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.