Plant FIBer expression Database

Potri.001G123900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G109500
[exp]
118 / 1e-34 ND /
Potri.003G109601
[exp]
103 / 2e-29 ND /
Potri.001G122600
[exp]
56 / 7e-10 AT4G16515 45 / 9e-07 root meristem growth factor 6, unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G123900.1 pacid=42789145 polypeptide=Potri.001G123900.1.p locus=Potri.001G123900 ID=Potri.001G123900.1.v4.1 annot-version=v4.1
ATGCACTCCTTCAAATCCTCACTTTTCATTTTTCTCTTGTCTCTTTCCATGCACGCAATATGTAATGCTCGAAATATTGGGGTGGTGAACGAGGGTTTTC
ATGCAAAAGTCTTGTTCTCTGCCAAGGTTGGAGAGAAAGTTGAACACAGCACAGATACAGTTCATGGAACTAATGATAGAGAGGGCGCCATCCGTGGAAA
GAGTAGTGCTCCTGGTGCTGCAATTATGACTCGAGAATCAAAGGATTCAAAGGCTATCACCAAAAGTTCAGGTATTCAGATTCTTAAGTCTCTTAACGGC
CTTGTGGTATCGCTTAAGGCAATGAATATAGAGGGATATTCAACAAGGCGAGCACTATCAGTAGCAGGATTTGGTTCCAATAATGTCAAGAAAGCCATGG
AATCCGGTGAGAACGAAGTAGAAGAGGATGCTGAGGTGATAGATTATGAACCACCACATCGGACGCCACCAATTCACAATAGAAAAACCTTAGTTATAGC
TGTCTAA
AA sequence
>Potri.001G123900.1 pacid=42789145 polypeptide=Potri.001G123900.1.p locus=Potri.001G123900 ID=Potri.001G123900.1.v4.1 annot-version=v4.1
MHSFKSSLFIFLLSLSMHAICNARNIGVVNEGFHAKVLFSAKVGEKVEHSTDTVHGTNDREGAIRGKSSAPGAAIMTRESKDSKAITKSSGIQILKSLNG
LVVSLKAMNIEGYSTRRALSVAGFGSNNVKKAMESGENEVEEDAEVIDYEPPHRTPPIHNRKTLVIAV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G123900
[exp]
0 1
AT5G63140 ATPAP29, PAP29 purple acid phosphatase 29 (.1... Potri.002G183200
[exp]
12.72 0.8503
AT4G00231 MEE50 maternal effect embryo arrest ... Potri.008G158901
[exp]
19.59 0.8288
AT5G07010 ATST2A ARABIDOPSIS THALIANA SULFOTRAN... Potri.001G036600
[exp]
28.67 0.8340
AT3G60650 unknown protein Potri.014G060400
[exp]
30.19 0.8259
Potri.002G182100
[exp]
34.81 0.8167
Potri.007G076600
[exp]
36.90 0.8274
AT4G17490 AP2_ERF ERF-6-6, ATERF6 ethylene responsive element bi... Potri.003G080600
[exp]
38.15 0.8261
AT4G39700 Heavy metal transport/detoxifi... Potri.005G079800
[exp]
43.30 0.8144
AT4G17980 NAC ANAC071 NAC domain containing protein ... Potri.019G099900
[exp]
44.89 0.7636
AT4G24975 Plant self-incompatibility pro... Potri.017G144361
[exp]
46.73 0.7869

Potri.001G123900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.