Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25230 829 / 0 RIN2 RPM1 interacting protein 2 (.1.2) AT5G51450 763 / 0 RIN3 RPM1 interacting protein 3 (.1.2) AT1G65040 113 / 1e-26 AtHrd1B homolog of yeast Hrd1, RING/U-box superfamily protein (.1.2.3) AT3G16090 105 / 8e-24 AtHrd1A homolog of yeast Hrd1, RING/U-box superfamily protein (.1) AT5G15820 52 / 5e-07 RING/U-box superfamily protein (.1) AT2G04240 49 / 2e-06 XERICO RING/U-box superfamily protein (.1.2) AT3G02340 50 / 3e-06 RING/U-box superfamily protein (.1) AT5G20910 49 / 4e-06 AIP2 ABI3-interacting protein 2, RING/U-box superfamily protein (.1) AT5G43200 47 / 8e-06 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT1G51930 45 / 1e-05 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G109400 [exp] 960 / 0 AT4G25230 790 / 0.0 RPM1 interacting protein 2 (.1.2) Potri.013G088400 [exp] 115 / 8e-27 AT3G16090 613 / 0.0 homolog of yeast Hrd1, RING/U-box superfamily protein (.1) Potri.019G051500 [exp] 106 / 4e-24 AT3G16090 661 / 0.0 homolog of yeast Hrd1, RING/U-box superfamily protein (.1) Potri.011G150800 [exp] 51 / 3e-07 AT3G61460 69 / 1e-14 brassinosteroid-responsive RING-H2 (.1) Potri.006G217600 [exp] 52 / 4e-07 AT5G20910 360 / 2e-125 ABI3-interacting protein 2, RING/U-box superfamily protein (.1) Potri.001G450700 [exp] 51 / 4e-07 AT3G61460 71 / 2e-15 brassinosteroid-responsive RING-H2 (.1) Potri.008G125700 [exp] 49 / 9e-07 AT2G01150 125 / 5e-37 RING-H2 finger protein 2B (.1) Potri.012G036700 [exp] 51 / 1e-06 AT3G19950 273 / 5e-90 RING/U-box superfamily protein (.1) Potri.010G118000 [exp] 49 / 1e-06 AT1G15100 142 / 7e-44 RING-H2 finger A2A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031728 [exp] 870 / 0 AT4G25230 843 / 0.0 RPM1 interacting protein 2 (.1.2) Lus10031152 [exp] 858 / 0 AT4G25230 821 / 0.0 RPM1 interacting protein 2 (.1.2) Lus10040359 [exp] 109 / 4e-25 AT3G16090 652 / 0.0 homolog of yeast Hrd1, RING/U-box superfamily protein (.1) Lus10023477 [exp] 109 / 6e-25 AT3G16090 650 / 0.0 homolog of yeast Hrd1, RING/U-box superfamily protein (.1) Lus10034667 [exp] 52 / 4e-07 AT5G20910 391 / 2e-137 ABI3-interacting protein 2, RING/U-box superfamily protein (.1) Lus10017865 [exp] 52 / 6e-07 AT5G20910 389 / 2e-136 ABI3-interacting protein 2, RING/U-box superfamily protein (.1) Lus10019686 [exp] 49 / 1e-06 AT1G72310 62 / 1e-11 RING/U-box superfamily protein (.1) Lus10011027 [exp] 51 / 2e-06 AT5G01960 619 / 0.0 RING/U-box superfamily protein (.1) Lus10000996 [exp] 50 / 4e-06 AT5G01960 626 / 0.0 RING/U-box superfamily protein (.1) Lus10017383 [exp] 46 / 4e-06 AT3G19950 127 / 8e-37 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [poplar] [flax] UBA PF02845 [poplar] [flax] CUE CUE domain CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.001G124000.1 pacid=42793563 polypeptide=Potri.001G124000.1.p locus=Potri.001G124000 ID=Potri.001G124000.1.v4.1 annot-version=v4.1 ATGGGTGTGAGTTATATAGCGATTTCAGCAGTATGTACGGCTTTGAGTTTTGTGGGTCTTCAATGGTGGACAGAGGTGTCTTTAGATAGATTGAGATCAG ATGGTTTGATTGGTGAGAATTTTATCAACTCGGAGAATGTCAACCGCGCGCTTGAGCTTCTGTTCAGTTCTTATGCAACCATTGCATTGTTGGTGAATTT TGTATTCAATGTATTTCTACTACTCAATCTTTGTCTCAAGACTATTTTCTTTGGAGAGTTATATTCTTCTGAAACTCGAAAACTAGTGGAACGTCTTATT AATTATGCTATTTACAAGGGAACCTTTCTGCCACTGGTTATTCCACCAACAATTTCTCAAACAGGTCTCTGGTCAATTTGGTTGACTGTTCTATGTTCTT TAAAGATGTTTCAAGCACTAGCTAGAGATCGACTTGAACGTTTGAATGCATCTCCTTCTGCAACTCCATGGACATATCTTCGTGTTTATTCAGCATTGTT GCTGGTCCTCTCTGTTGACTTTTTCTGGATACAGATGTGTTTCGTGATATACAGAAGTACGGGCTCGTCCATGTTTCTGTTGTTGTTCTTTGAGCCTTTC AGTATTGCTTTTGAGACCATGCAAGCTATGCTGGTTCATGGATTTCAGTTGCTTGAGATTTGGTTCCATCATTCGGCTGGGAATAGCACAAATTGCCAAA GGTTCAAGTTTTTTGATGCAATGAGAGCAGGTTCATTGTTGGAGTGGAAAGGCGTTCTTATCCGGAACTTGGGTTTTTCGCTAGACATGGCAACCTTATT AATGGCACTTGGTCATTATGTGTATATATGGTGGCTTCATGGTGTGGCATTTCATCTTGTGGATGCAGTTCTCTTTTTGAATATACGTGCATTGCTAAGC GCTATCATAAAGCGTATAAAAGGATTCATCAAGCTTAGAATAGCTTTAGGTGCCCTTCACGCAGCACTTCCTGATGCAACATCTGAAGAGCTACGAGCAT ATGATGATGAATGTGCTATCTGTAGGGAACCTATGGCTAAGGCCAAAAGGCTACATTGCAGTCACATATTTCATCTTGTTTGCTTGAGATCTTGGTTGGA TCAGGGTTTAAATGAGATATACTCATGCCCCACTTGTCGGAAGCCACTTTTTGTAGACAGGCCTGAAAATGAAGCAAGTACTCATACTGGAGAAGCTCTA ACAGATGAACAACTTGCTCATCAAATAAATGAAGGACGTGATCGGCAAAACACTCCAGGTCATGTGCTGTCTGCTGGAGTATTCCCTAACCAGATTCGGA ACTCTATGGAAGGCAGCCCTTGGAGAAGTGCAGGGTTGGATTCAAGTTGGCTACCCACTTGGCCCAGCCAGGGTGGAGATGGGGCTGGTCCCTCAACAGC TATGAGATCTGTTGGATTGGGTAGGGTTCAGATGATGATGAGGCATCTTGCATCTGTGGGAGAAACTTATGCACAAACTGCCCTTGAAGATGCTGCTTGG AGCCTTTGGCCAACGAATCCATCTCACGCTACTCCATCTACCTCTTTCATCCCTCCTGCTGCTGGTGGAAGACGCCCTGGTGGCACTGGTGGTTTACATG TGAGCACCACATCACGCACCACAAATGACAACATAGCAAACATACTTGCCATGGCTGAGACAGTGCGGGAGGTTTTGCCCCACATCCCGGATGAGTTGAT ACTCCAGGACTTGCAGCGAACAAATTCTGCTACTGTTACTGTAAATAATCTCCTGCAAAGGTGA
AA sequence Show only first row Show all	>Potri.001G124000.1 pacid=42793563 polypeptide=Potri.001G124000.1.p locus=Potri.001G124000 ID=Potri.001G124000.1.v4.1 annot-version=v4.1 MGVSYIAISAVCTALSFVGLQWWTEVSLDRLRSDGLIGENFINSENVNRALELLFSSYATIALLVNFVFNVFLLLNLCLKTIFFGELYSSETRKLVERLI NYAIYKGTFLPLVIPPTISQTGLWSIWLTVLCSLKMFQALARDRLERLNASPSATPWTYLRVYSALLLVLSVDFFWIQMCFVIYRSTGSSMFLLLFFEPF SIAFETMQAMLVHGFQLLEIWFHHSAGNSTNCQRFKFFDAMRAGSLLEWKGVLIRNLGFSLDMATLLMALGHYVYIWWLHGVAFHLVDAVLFLNIRALLS AIIKRIKGFIKLRIALGALHAALPDATSEELRAYDDECAICREPMAKAKRLHCSHIFHLVCLRSWLDQGLNEIYSCPTCRKPLFVDRPENEASTHTGEAL TDEQLAHQINEGRDRQNTPGHVLSAGVFPNQIRNSMEGSPWRSAGLDSSWLPTWPSQGGDGAGPSTAMRSVGLGRVQMMMRHLASVGETYAQTALEDAAW SLWPTNPSHATPSTSFIPPAAGGRRPGGTGGLHVSTTSRTTNDNIANILAMAETVREVLPHIPDELILQDLQRTNSATVTVNNLLQR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25230		RIN2	RPM1 interacting protein 2 (.1...		Potri.001G124000 [exp]	0	1
AT4G04960			Concanavalin A-like lectin pro...		Potri.011G053100 [exp]	6.00	0.7709
AT4G32280	AUX_IAA	IAA29	indole-3-acetic acid inducible...		Potri.006G255200 [exp]	6.08	0.7805
AT3G55830		EPC1	ECTOPICALLY PARTING CELLS, Nuc...		Potri.008G065800 [exp]	17.32	0.7586
AT5G05310			TLC ATP/ADP transporter (.1.2....		Potri.019G048700 [exp]	17.66	0.7603
AT1G78070			Transducin/WD40 repeat-like su...		Potri.005G168600 [exp]	19.62	0.6998
AT2G20190		ATCLASP	CLIP-associated protein (.1)		Potri.002G253200 [exp]	22.58	0.7719
AT4G04960			Concanavalin A-like lectin pro...		Potri.011G053200 [exp]	25.47	0.7579
AT4G14290			alpha/beta-Hydrolases superfam...		Potri.010G029200 [exp]	30.85	0.7331
AT1G63260		TET10	tetraspanin10 (.1.2.3)		Potri.001G107200 [exp]	32.86	0.7657
AT3G23150		ETR2	ethylene response 2, Signal tr...		Potri.008G164400 [exp]	32.98	0.7292	ETR2.2

Compare expression of checked genes

Potri.001G124000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.