Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47420 714 / 0 AtG3Pp1, ATPS3 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) AT1G30560 588 / 0 AtG3Pp3 glycerol-3-phosphate permease 3, Major facilitator superfamily protein (.1) AT4G25220 574 / 0 AtG3Pp2, RHS15 glycerol-3-phosphate permease 2, root hair specific 15 (.1) AT4G17550 531 / 0 AtG3Pp4 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1) AT2G13100 512 / 5e-179 AtG3Pp5 glycerol-3-phosphate permease 5, Major facilitator superfamily protein (.1.2.3) AT2G38060 44 / 0.0003 PHT4;2 phosphate transporter 4;2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G109300 [exp] 889 / 0 AT3G47420 694 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Potri.001G152300 [exp] 568 / 0 AT4G17550 692 / 0.0 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1) Potri.018G115000 [exp] 525 / 0 AT2G13100 699 / 0.0 glycerol-3-phosphate permease 5, Major facilitator superfamily protein (.1.2.3) Potri.003G082366 [exp] 514 / 3e-179 AT4G17550 624 / 0.0 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031153 [exp] 677 / 0 AT3G47420 695 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Lus10027210 [exp] 669 / 0 AT3G47420 705 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Lus10038923 [exp] 577 / 0 AT3G47420 586 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Lus10004358 [exp] 566 / 0 AT4G17550 725 / 0.0 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1) Lus10040154 [exp] 564 / 0 AT4G17550 734 / 0.0 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1) Lus10040002 [exp] 503 / 4e-175 AT2G13100 708 / 0.0 glycerol-3-phosphate permease 5, Major facilitator superfamily protein (.1.2.3) Lus10027211 [exp] 439 / 1e-152 AT3G47420 454 / 9e-159 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Lus10031729 [exp] 134 / 1e-37 AT3G47420 155 / 2e-46 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00083 [poplar] [flax] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Potri.001G124200.2 pacid=42792055 polypeptide=Potri.001G124200.2.p locus=Potri.001G124200 ID=Potri.001G124200.2.v4.1 annot-version=v4.1 ATGGGTCCATTTCACGAAGCAGCTGAAAGAAACCAAAATAAGCCCCCTATTGGTATTCGATTCTTAGAGAGCATAAAGAAGAAAAGGCTTTCCTACAGAA CCCACCAAGCCATTGTCTTGATTGTAACTTTTTTGGCATACACTAGCTACCATGCTGCTCGGAAAACCACGAGCATTGTCAAGAGCACCCTTGATCCAGA GTCTTCCAAGGTGGAGTTGAAGTTTGTCCCATGGAGGATTACTTACTCAAGTGAACCAGTTGAAAGAAAAAGTCTTTCATGGAAACTTGGAGATGGTTGG GCTCCATTTAATGCCTCAGATGGGACAGCCTTGCTTGGTGAACTCGACTTGGCTTTCCTTGCTATATATGCCTTGGGAATGTACTTTTCAGGGCACCTGG GTGATAGAATGAATTTAAGGATCCTTTTGACAATAGGAATGGTTGGAACTGGTATATTTACTTCATTATTCGGTGTTGGATTTTGGGCAAATGTGCATAA CTTTTACTATTACTTGATAGTGCAAATGCTTGCTGGGCTGTTCCAATCAACTGGATGGCCTTCAGTGGTTGCAGTGGTTGGTAACTGGTTTGGGAAGAAG AAGAGAGGGCTAATTATGGGTATATGGAATGCCCACACTTCTGTTGGGAATATTTCAGGCTCGTTGATTGCTGCTGCAATGTTGAGCTATGGATGGGGCT GGTCCTTTGTTTTGCCTGGTCTCCTCATTGCTTTTGCTGGCTTGCTTGTGTTTACACTACTGCCTGTTAGTCCCGAGGCTGTTGGAGCTGACAAAGATGA AGATGAATTGGATTCTCCAAATAAAGCTGGGGAGGAAGTTACAGAGCCCCTTTTAGTATCGGACTCTGATGTTAAACAGGAAGCTGTGGGGTTCATTGAA GCATGGAAAATACCTGGAGTTGCGCCCTTTGCTCTCTGTCTATTTTTTGCCAAACTGGTGGCCTACACTTTTCTCTACTGGCTTCCTTTCTACATTAGCC AAACAGCCATTGACGGAAAGTACTTATCTGATGGAACTGCTGGGAACTTGTCAACATTTTTTGATGTTGGAGGGGTGGTTGGGGGGATTTTAGCTGGGCA CATTTCTGATCGCCTAGATGCCAGAGCAATTACAGCAGCAAGCTTCATGTATTGTTCCATCCCTGCTCTTTTCTTCTACCGGAGCTATGGACACCTTTCC TTGGGTCTAAACATTGCTTTTATGCTTCTTACTGGCATGCTTGTGAATGGTCCTTATGCTCTTATAACAACAGCCGTCTCGGCTGACTTGGGAACTCACA GTTCCTTGAAAGGGAACTCGAGGGCATTGGCAACTGTTACGGCAATCATAGACGGAACAGGCTCGGTCGGAGCTGCAATCGGACCTTTATTAACAGGTTA CATTTCTGCTAAGAGCTGGAGTGCAGTTTTCACAATGTTAATGGCTGCAGCTCTAGTTGCAGGTCTACTATTGACTAGACTTGTTGTGGCTGAAGTGGCT GCAAAGATTGCTGAATCGAGGTCTCAAGGATCTCCTGCATCAAAAGCACAAGCAGCTGCATTTGATGTGTGA
AA sequence Show only first row Show all	>Potri.001G124200.2 pacid=42792055 polypeptide=Potri.001G124200.2.p locus=Potri.001G124200 ID=Potri.001G124200.2.v4.1 annot-version=v4.1 MGPFHEAAERNQNKPPIGIRFLESIKKKRLSYRTHQAIVLIVTFLAYTSYHAARKTTSIVKSTLDPESSKVELKFVPWRITYSSEPVERKSLSWKLGDGW APFNASDGTALLGELDLAFLAIYALGMYFSGHLGDRMNLRILLTIGMVGTGIFTSLFGVGFWANVHNFYYYLIVQMLAGLFQSTGWPSVVAVVGNWFGKK KRGLIMGIWNAHTSVGNISGSLIAAAMLSYGWGWSFVLPGLLIAFAGLLVFTLLPVSPEAVGADKDEDELDSPNKAGEEVTEPLLVSDSDVKQEAVGFIE AWKIPGVAPFALCLFFAKLVAYTFLYWLPFYISQTAIDGKYLSDGTAGNLSTFFDVGGVVGGILAGHISDRLDARAITAASFMYCSIPALFFYRSYGHLS LGLNIAFMLLTGMLVNGPYALITTAVSADLGTHSSLKGNSRALATVTAIIDGTGSVGAAIGPLLTGYISAKSWSAVFTMLMAAALVAGLLLTRLVVAEVA AKIAESRSQGSPASKAQAAAFDV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Potri.001G124200 [exp]	0	1
AT5G01820		PKS24, CIPK14, ...	SNF1-RELATED PROTEIN KINASE 3....		Potri.016G133900 [exp]	2.23	0.8982	Pt-CIPK14.1
AT3G09600	MYB	LCL5 (LHY-CCA1-...	REVEILLE 8, LHY-CCA1-LIKE5, Ho...		Potri.006G133000 [exp]	4.00	0.9174
AT5G12860		DIT1	dicarboxylate transporter 1 (....		Potri.009G053800 [exp]	5.47	0.9221
AT5G46240		KAT1	potassium channel in Arabidops...		Potri.004G132200 [exp]	6.48	0.8966	Pt-KAT1.1
AT2G45680	TCP	TCP9	TCP family transcription facto...		Potri.002G152200 [exp]	9.64	0.9010
					Potri.010G081351 [exp]	15.49	0.8643
AT5G62680			Major facilitator superfamily ...		Potri.001G351200 [exp]	15.74	0.8997
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Potri.018G131500 [exp]	17.32	0.8870
AT2G03760		AtSOT12, AtSOT1...	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.003G188933 [exp]	18.46	0.8905
					Potri.010G144600 [exp]	21.90	0.8697

Compare expression of checked genes

Potri.001G124200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.