Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51410 350 / 2e-120 LUC7 N_terminus domain-containing protein (.1.2.3) AT5G17440 67 / 4e-12 LUC7 related protein (.1) AT3G03340 66 / 6e-12 UNE6 unfertilized embryo sac 6, LUC7 related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G109000 [exp] 437 / 1e-154 AT5G51410 345 / 2e-118 LUC7 N_terminus domain-containing protein (.1.2.3) Potri.019G055000 [exp] 74 / 2e-14 AT5G17440 438 / 6e-153 LUC7 related protein (.1) Potri.013G084800 [exp] 68 / 2e-12 AT5G17440 473 / 2e-166 LUC7 related protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031732 [exp] 392 / 5e-137 AT5G51410 381 / 1e-132 LUC7 N_terminus domain-containing protein (.1.2.3) Lus10027212 [exp] 382 / 5e-133 AT5G51410 380 / 2e-132 LUC7 N_terminus domain-containing protein (.1.2.3) Lus10038924 [exp] 382 / 7e-133 AT5G51410 382 / 3e-133 LUC7 N_terminus domain-containing protein (.1.2.3) Lus10031156 [exp] 372 / 6e-129 AT5G51410 360 / 1e-124 LUC7 N_terminus domain-containing protein (.1.2.3) Lus10026846 [exp] 71 / 4e-13 AT5G17440 522 / 0.0 LUC7 related protein (.1) Lus10020225 [exp] 69 / 2e-12 AT3G03340 516 / 1e-179 unfertilized embryo sac 6, LUC7 related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03194 [poplar] [flax] LUC7 LUC7 N_terminus
Representative CDS sequence Show only first row Show all	>Potri.001G124300.2 pacid=42791385 polypeptide=Potri.001G124300.2.p locus=Potri.001G124300 ID=Potri.001G124300.2.v4.1 annot-version=v4.1 ATGGACCTTCAACGAGCCATGCTAGATGAACTCATGGGTGCAGATCGTAATTTGACGGAGGAAGAGAGAAAAGATTACAAGGAAATAACATGGGATTCAA AGGAGGTTTGTGCTTATTATATGGCTCGGTTTTGTCCTCATGACCTCTTTGTCAACACCAAAAGTGATATTGGACCATGTGATAGGGTTCATGATCCAAA GTTGAAAGAAAGCTTTGAGAAGTCCCCAAGACATGATGCATATCTGGCTAAATTTGAAGCAGAACTTGCTCAGAGATGTGAGAAATTGGTTATGGAATTG GATAGAAGAGTTAGGCGTGGACGAGAACGCCTGGCACAAGGGGATGAACCTATGCCACCTCCTCCGCTGTCAGCTGACAAGTCCGAACGATTATCTGTGG TGGAGGAGAAAATAAAAAACCTGCTGGTGCAAGTGGAGGCCCTTGGCGAAGTTGGGAAGGTGGATGAAGCTCAAGCGCTTATGAAAAAGGTGGACGAACT TAATGCTGAGAAAGCATTGATTCAATGCCAGAATGATAAAGTATTGGTGGTTCCACAGGAGAAAAAGATGGCTTTGTGTGAGATTTGTGGTTCCTTTCTG GTTGCAAATGATGTTGCAGAGAGAACCCAGTCTCATATCACAGGGAAGCAGCACATCGGATATGGGATGGTCCGGGATTATATCACCGAGTACAAGGAAG CTAAGGAGAAGGCAAGGGAAGAGGAAAGATTAGCAAGGGAAAAAGAAGCCGAAGAACGGAGGAAACTGAGGGAGAAGGAAAATGAGAGTAGGAGGAGTGG TTCAGGTGATAGAGATCGGTATCATGATCGAGATAGAGAAAGGGAGCGGGACAGGCACCGAGATCGTGAAAGGTCAAGGGAGTGGAATGGTAGGGGTAGT CGAGATGATTGGAGGGCTAAGAATGGAAGGGATGGTGGCAGGGATAGGCACCGTGATCGGAGCAGGTCATGTTCCCCTGTTAGGCATGGTCGCAGGAGGT CACCTAGAAGTCCAGTTCGCCCAAATTAG
AA sequence Show only first row Show all	>Potri.001G124300.2 pacid=42791385 polypeptide=Potri.001G124300.2.p locus=Potri.001G124300 ID=Potri.001G124300.2.v4.1 annot-version=v4.1 MDLQRAMLDELMGADRNLTEEERKDYKEITWDSKEVCAYYMARFCPHDLFVNTKSDIGPCDRVHDPKLKESFEKSPRHDAYLAKFEAELAQRCEKLVMEL DRRVRRGRERLAQGDEPMPPPPLSADKSERLSVVEEKIKNLLVQVEALGEVGKVDEAQALMKKVDELNAEKALIQCQNDKVLVVPQEKKMALCEICGSFL VANDVAERTQSHITGKQHIGYGMVRDYITEYKEAKEKAREEERLAREKEAEERRKLREKENESRRSGSGDRDRYHDRDRERERDRHRDRERSREWNGRGS RDDWRAKNGRDGGRDRHRDRSRSCSPVRHGRRRSPRSPVRPN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51410			LUC7 N_terminus domain-contain...		Potri.001G124300 [exp]	0	1
AT1G03350			BSD domain-containing protein ...		Potri.015G050700 [exp]	4.24	0.8066
AT1G21200	Trihelix		sequence-specific DNA binding ...		Potri.003G204700 [exp]	11.31	0.7474
AT3G43590			zinc knuckle (CCHC-type) famil...		Potri.004G193500 [exp]	12.84	0.7442
AT1G32130		HNI9, ATIWS1	HIGH NITROGEN INSENSITIVE 9, A...		Potri.001G135900 [exp]	14.42	0.7912
AT4G21670		FRY2, FLP1, ATC...	FIERY 2, C-terminal domain pho...		Potri.004G040000 [exp]	14.49	0.7964
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Potri.009G047800 [exp]	16.73	0.7984
AT5G45190			Cyclin family protein (.1.2)		Potri.003G148800 [exp]	20.44	0.7617
AT5G67320		HOS15	high expression of osmotically...		Potri.007G050100 [exp]	21.44	0.7863
AT1G61730	GeBP		DNA-binding storekeeper protei...		Potri.005G075000 [exp]	22.75	0.7955
AT2G45590			Protein kinase superfamily pro...		Potri.002G150800 [exp]	22.89	0.6656

Compare expression of checked genes

Potri.001G124300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.