Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47430 329 / 1e-115 PEX11B peroxin 11B (.1) AT1G47750 95 / 1e-23 PEX11A peroxin 11A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G108900 [exp] 398 / 6e-143 AT3G47430 324 / 1e-113 peroxin 11B (.1) Potri.002G134000 [exp] 121 / 2e-33 AT1G47750 332 / 8e-116 peroxin 11A (.1) Potri.014G042000 [exp] 115 / 3e-31 AT1G47750 327 / 8e-114 peroxin 11A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038925 [exp] 351 / 4e-124 AT3G47430 321 / 3e-112 peroxin 11B (.1) Lus10027213 [exp] 225 / 1e-75 AT3G47430 200 / 8e-66 peroxin 11B (.1) Lus10003945 [exp] 118 / 5e-32 AT1G47750 322 / 8e-112 peroxin 11A (.1) Lus10029260 [exp] 117 / 1e-31 AT1G47750 318 / 4e-110 peroxin 11A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05648 [poplar] [flax] PEX11 Peroxisomal biogenesis factor 11 (PEX11)
Representative CDS sequence Show only first row Show all	>Potri.001G124400.1 pacid=42791690 polypeptide=Potri.001G124400.1.p locus=Potri.001G124400 ID=Potri.001G124400.1.v4.1 annot-version=v4.1 ATGAATGACACAGTGGACAAGCTGGTCATCTTTCTAGCAAAGAGAGATGGCATAGATAAGCTTGTCAAGACTTTCCAGTATGTGTCCAAGCTTGTTCACT GGCATGTAGAAGCCACCCATCCAGACGCTGCAATGAGATTCAAGCAATGGGAAGTTGCTTCTGGCCTTGGCCGGAAAGCCTTCAGAACTGGCAGGTTTCT CACTGGCTTCAATGCTCTAAGAAGAGGCCCTGGCGCAACCCCGACGTTAAAGGTCTTAGCTGTTCTTGCTAATGCAGGAGAAATGGTCTATTTCTTTTTT GACCATTTTCTTTGGTTATCAAGAATTGGAACTTTGGATGCAAAGTTGGCAAGAAGGATGAGCTTCATTTCAGCATTGGGCGAGTCTTTTGGCTACATAT TTTTCATTATAGCTGATTTTATTATAATGAAAGAAGGGCTAGAAACAGAGAGAAGGCTCTTAATCTCTTCAAAAGAAGATGGTTCAGAAGATGCGAAAGA GAGCACGAGGAAGATCAGAGTAGAGAGAGTGATGAGGTTGATGGCAGTAGCAGCTAACGTTGCAGATTTGATTATTGCACTGGCAGATATTGAGCCCAAC CCATTTTGCAACCATGCTGTTACTCTTGGTATTAGTGGGTTGGTGTCTGCTTGGGCTGGTTGGTACAGAAATTGGCCCTCGTAG
AA sequence Show only first row Show all	>Potri.001G124400.1 pacid=42791690 polypeptide=Potri.001G124400.1.p locus=Potri.001G124400 ID=Potri.001G124400.1.v4.1 annot-version=v4.1 MNDTVDKLVIFLAKRDGIDKLVKTFQYVSKLVHWHVEATHPDAAMRFKQWEVASGLGRKAFRTGRFLTGFNALRRGPGATPTLKVLAVLANAGEMVYFFF DHFLWLSRIGTLDAKLARRMSFISALGESFGYIFFIIADFIIMKEGLETERRLLISSKEDGSEDAKESTRKIRVERVMRLMAVAANVADLIIALADIEPN PFCNHAVTLGISGLVSAWAGWYRNWPS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47430		PEX11B	peroxin 11B (.1)		Potri.001G124400 [exp]	0	1
AT1G58290		AtHEMA1, HEMA1	Arabidopsis thaliana hemA 1, G...		Potri.002G107800 [exp]	2.64	0.9770
AT1G58684			Ribosomal protein S5 family pr...		Potri.001G256800 [exp]	6.32	0.9721
AT5G04590		SIR	sulfite reductase (.1)		Potri.009G052600 [exp]	7.34	0.9694
AT1G44000			unknown protein		Potri.005G184700 [exp]	9.59	0.9566
AT2G41940	C2H2ZnF	ZFP8	zinc finger protein 8 (.1)		Potri.016G060600 [exp]	9.69	0.9731
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Potri.001G160400 [exp]	10.67	0.9727	ZIP4.2
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Potri.016G135500 [exp]	10.81	0.9638
AT1G75690		LQY1	LOW QUANTUM YIELD OF PHOTOSYST...		Potri.002G023600 [exp]	12.00	0.9642
AT3G29240			Protein of unknown function (D...		Potri.004G125800 [exp]	13.74	0.9540
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.004G096200 [exp]	14.49	0.9699

Compare expression of checked genes

Potri.001G124400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.