Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51400 330 / 1e-115 PLAC8 family protein (.1) AT2G45010 330 / 2e-115 PLAC8 family protein (.1.2) AT2G40935 96 / 2e-24 PLAC8 family protein (.1.2.3) AT3G18470 63 / 1e-12 PLAC8 family protein (.1) AT1G49030 59 / 3e-10 PLAC8 family protein (.1) AT3G18460 57 / 9e-10 PLAC8 family protein (.1) AT3G18450 56 / 2e-09 PLAC8 family protein (.1) AT1G52200 55 / 4e-09 PLAC8 family protein (.1) AT1G58320 54 / 6e-09 PLAC8 family protein (.1) AT5G35525 53 / 8e-09 PLAC8 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G108800 [exp] 442 / 5e-160 AT5G51400 339 / 4e-119 PLAC8 family protein (.1) Potri.002G141600 [exp] 315 / 1e-109 AT2G45010 303 / 6e-105 PLAC8 family protein (.1.2) Potri.006G024900 [exp] 84 / 1e-19 AT2G40935 261 / 6e-90 PLAC8 family protein (.1.2.3) Potri.010G108800 [exp] 71 / 4e-15 AT1G14870 179 / 8e-58 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G109100 [exp] 71 / 5e-15 AT1G14870 165 / 1e-52 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G108900 [exp] 70 / 2e-14 AT1G14870 142 / 4e-43 PLANT CADMIUM RESISTANCE 2 (.1) Potri.008G132900 [exp] 66 / 3e-13 AT1G14870 189 / 7e-62 PLANT CADMIUM RESISTANCE 2 (.1) Potri.008G132775 [exp] 66 / 5e-13 AT1G14870 185 / 2e-60 PLANT CADMIUM RESISTANCE 2 (.1) Potri.007G042800 [exp] 64 / 2e-12 AT1G14870 152 / 7e-48 PLANT CADMIUM RESISTANCE 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038926 [exp] 380 / 2e-133 AT2G45010 342 / 4e-118 PLAC8 family protein (.1.2) Lus10027214 [exp] 374 / 7e-133 AT2G45010 336 / 1e-117 PLAC8 family protein (.1.2) Lus10028184 [exp] 330 / 2e-115 AT2G45010 319 / 2e-111 PLAC8 family protein (.1.2) Lus10031733 [exp] 325 / 5e-114 AT2G45010 313 / 3e-109 PLAC8 family protein (.1.2) Lus10042885 [exp] 321 / 5e-112 AT2G45010 323 / 1e-112 PLAC8 family protein (.1.2) Lus10005257 [exp] 75 / 2e-16 AT2G40935 228 / 6e-77 PLAC8 family protein (.1.2.3) Lus10021696 [exp] 64 / 2e-12 AT1G14870 177 / 5e-57 PLANT CADMIUM RESISTANCE 2 (.1) Lus10004063 [exp] 61 / 1e-11 AT1G68630 132 / 2e-40 PLAC8 family protein (.1) Lus10009036 [exp] 60 / 4e-11 AT1G68630 122 / 2e-36 PLAC8 family protein (.1) Lus10008890 [exp] 58 / 1e-10 AT1G68630 119 / 6e-35 PLAC8 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04749 [poplar] [flax] PLAC8 PLAC8 family
Representative CDS sequence Show only first row Show all	>Potri.001G124500.1 pacid=42789519 polypeptide=Potri.001G124500.1.p locus=Potri.001G124500 ID=Potri.001G124500.1.v4.1 annot-version=v4.1 ATGGCTGAAGGAACCGCTTCAAGATATGTGAAGTTAACAAAAGAACAAGCTGATGTAGAGGAGATTAAGCCCGGTGAGCTAAATCAGCCCATTGAGGTTC CTCAGTTGACCGTTCGTAAGTGTAATGAATGTGGGCAACCTTTACCTGAAAACTTTGAGCCTCCAGGAGATGAGCCTTGGACTACTGGGATTTTTGGATG TGCTGATGATACCGAAAGCTGCTGGACAGGACTATTTTGCCCTTGTGTTCTATTCGGTAGAAATATTGAGAGCTTGAGAGATGATACTCCCTGGACTACC CCGTGCATTTGCCATGCTGTGTGTGTTGAAGGTGGCCTTGCACTGGCCGCAGCAACAGCAGTTTTCCATGGCTTTCACCCAGGGACATCATTTCTCATTT GTGAGGGTTTACTTTTTGCATGGTGGATGTGTGGCGTATACACTGGTCTTGTCAGGCAGTCTTTACAGAAGAAATATCATCTCAAGAATTCACCTTGTGA CCCATGCATGGTGCACTGCTGCATGCACTGGTGTGCTTTGTGCCAGGAGCACAGGGAGATGAAAGGTCGTCTATCAGATAACTTTGTCATCCCAATGACC GTTGTCAATCCTCCCCTTGTTCAAGAGATGAGCGCCACCAACGAAAACCAGGATTCTACTCTTTCCTCTGATAAGGGCACCAGCTTGGAGATGCAGCCTC TGTAA
AA sequence Show only first row Show all	>Potri.001G124500.1 pacid=42789519 polypeptide=Potri.001G124500.1.p locus=Potri.001G124500 ID=Potri.001G124500.1.v4.1 annot-version=v4.1 MAEGTASRYVKLTKEQADVEEIKPGELNQPIEVPQLTVRKCNECGQPLPENFEPPGDEPWTTGIFGCADDTESCWTGLFCPCVLFGRNIESLRDDTPWTT PCICHAVCVEGGLALAAATAVFHGFHPGTSFLICEGLLFAWWMCGVYTGLVRQSLQKKYHLKNSPCDPCMVHCCMHWCALCQEHREMKGRLSDNFVIPMT VVNPPLVQEMSATNENQDSTLSSDKGTSLEMQPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51400			PLAC8 family protein (.1)		Potri.001G124500 [exp]	0	1
					Potri.004G048201 [exp]	8.60	0.8421
AT2G40120			Protein kinase superfamily pro...		Potri.008G069000 [exp]	9.74	0.8444
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Potri.014G017500 [exp]	14.69	0.8273
AT1G60430		ARPC3	actin-related protein C3 (.1.2...		Potri.018G123100 [exp]	15.49	0.8125
AT2G28310			Protein of unknown function (D...		Potri.009G011000 [exp]	27.27	0.8338
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.010G229600 [exp]	28.01	0.8266	RAB1.1
AT2G35680			Phosphotyrosine protein phosph...		Potri.014G045500 [exp]	30.39	0.8015
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.010G187600 [exp]	34.49	0.8155
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.002G242500 [exp]	37.09	0.8146
AT4G13930		SHM4	serine hydroxymethyltransferas...		Potri.017G059300 [exp]	37.68	0.8142	SHM4.2

Compare expression of checked genes

Potri.001G124500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.