Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47450 727 / 0 RIF1, ATNOA1, ATNOS1, NOS1 RESISTANT TO INHIBITION WITH FOSMIDOMYCIN 1, NITRIC OXIDE SYNTHASE 1, NO ASSOCIATED 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G57180 106 / 7e-24 BPG2 BRASSINAZOLE\(BRZ\) INSENSITIVE PALE GREEN 2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G10620 99 / 1e-21 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G044700 [exp] 106 / 6e-24 AT3G57180 750 / 0.0 BRASSINAZOLE\(BRZ\) INSENSITIVE PALE GREEN 2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G010400 [exp] 96 / 1e-20 AT4G10620 695 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031160 [exp] 811 / 0 AT3G47450 719 / 0.0 RESISTANT TO INHIBITION WITH FOSMIDOMYCIN 1, NITRIC OXIDE SYNTHASE 1, NO ASSOCIATED 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10031736 [exp] 720 / 0 AT3G47450 622 / 0.0 RESISTANT TO INHIBITION WITH FOSMIDOMYCIN 1, NITRIC OXIDE SYNTHASE 1, NO ASSOCIATED 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10031030 [exp] 121 / 9e-29 AT3G57180 731 / 0.0 BRASSINAZOLE\(BRZ\) INSENSITIVE PALE GREEN 2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035420 [exp] 119 / 5e-28 AT3G57180 732 / 0.0 BRASSINAZOLE\(BRZ\) INSENSITIVE PALE GREEN 2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035986 [exp] 103 / 3e-23 AT4G10620 694 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016692 [exp] 82 / 3e-16 AT4G10620 501 / 1e-174 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000122 [exp] 61 / 3e-10 AT4G10620 346 / 9e-117 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01926 [poplar] [flax] MMR_HSR1 50S ribosome-binding GTPase
Representative CDS sequence Show only first row Show all	>Potri.001G124900.1 pacid=42788418 polypeptide=Potri.001G124900.1.p locus=Potri.001G124900 ID=Potri.001G124900.1.v4.1 annot-version=v4.1 ATGGCACCTAAATCCCTCTCCGCATTTCTCTTTCCACTCTCTCTCCCCCATAATCTCACATACTCCACCCCTAAATTCCTTAGAATTTACACCAAACCCT CTCCCATCCTTTGCAAATCACAGCAAACGCCAACAGCGACAGCCCACTCCTCTGTTTCCATACCCGACCAGGATGGCACCGGGGCAGCTGCTCCTTCCCG AGGAGACCAGTTCCTTGAGCGTCAAAAATCGTTTGAGGCTGCTAAGTTGGTAATGAAAGAGGTGAAGAAGAGTAAGAGAAGAGAGAAAGGGAAGGCTTTG AAGCTCAATACGGCTGTTGCTAGTTGTTATGGATGTGGAGCTCCGTTGCATACCTTGGATCCTGATGCTCCGGGTTTTGTCGACCCGGATACTTATGAAT TGAAGAAGAGACACCGCCAACTTAGAACAGTTCTTTGTGGAAGGTGCAGGCTTTTATCTCATGGGCACATGATAACTGCTGTTGGTGGAAATGGCGGGTA TTCCGGTGGGAAGCAGTTTGTTTCAGCCGATGAGCTTCGTGAAAAGCTGTCTCATTTGCGGCACGAGAAAGCCTTGATTGTCAAATTGGTTGATGTTGTG GACTTCAATGGCAGCTTTTTGGCTCGCTTGCGTGATCTTGTTGGTGCCAATCCAATAATACTAGTTGTGACTAAGGTTGATCTCCTTCCTAGGGACACTG ATCTTAATTGTGTTGGTGATTGGGTTGTAGAGGCCACCACAAAGAAAAAGCTTAGTGTTTTGAGTGTCCATCTCACCAGCTCCAAATCATTAGTTGGGAT TGCTGGAGTTGTGTCAGAAATTCAAAGGGAGAAAAAGGGCCGAGATGTTTACATTCTGGGTTCAGCTAATGTTGGGAAATCTGCATTCATCAGTGCTTTA CTGAAAACAATGGCACTTCGGGATCCAGCTGCTGCTGCTGCTCGAAAATACAAACCAATACAGTCGGCTGTTCCTGGAACAACCTTAGGTCCAATTCAGA TTGACGCTTTCCTTGGAGGAGGGAAATTATATGACACACCCGGAGTTCATCTCCACCATAGACAAGCTGCAGTGGTTCATTCAGAAGATTTACCTGCTCT TGCCCCTCGAAGTCGTCTCAAGGGTCAATCTTTTCCTAACTCTAAGGTGGCCTCTGAAAACAGGATGGCAGAAAAAATCCAATCCAATGGCTTGAATGGA TTTTCAATTTTTTGGGGAGGTCTTGTAAGAGTTGATATCTTGAAGGTTCTCCCCGAAACATGCTTAACATTTTATGGCCCCAAGGCTCTGCAGATTCATG TAGTACCCACTGATAAAGCTGATAAGTTTTACCAGAAAGAACTTGGAGTTCTATTGACACCTCCAACTGGAAAAGAGAGAGCACAAGATTGGAGAGGACT TGAATTAGAGCAGCAGTTGCAAGTAAAATTCGAGGAAGTGGAAAGGCCTGCTAGTGATGTAGCTATATCGGGTCTCGGATGGATTGCTGTGGAACCGGTA AGCAAATCACTTAGGCGGTCGGATATAAATTTGGAAGAAACTATCAAAGAACTGCATTTAGCTGTGCATGTACCAAAGCCAGTGGAGGTTTTTGTCCGGC CTCCTTTACCAGTAGGCAAGGCTGGAGCACAGTGGTATCAGTATCGAGAGTTGACAGAGAAAGAAGAAGAATTGAGACCAAAATGGCACTATTAG
AA sequence Show only first row Show all	>Potri.001G124900.1 pacid=42788418 polypeptide=Potri.001G124900.1.p locus=Potri.001G124900 ID=Potri.001G124900.1.v4.1 annot-version=v4.1 MAPKSLSAFLFPLSLPHNLTYSTPKFLRIYTKPSPILCKSQQTPTATAHSSVSIPDQDGTGAAAPSRGDQFLERQKSFEAAKLVMKEVKKSKRREKGKAL KLNTAVASCYGCGAPLHTLDPDAPGFVDPDTYELKKRHRQLRTVLCGRCRLLSHGHMITAVGGNGGYSGGKQFVSADELREKLSHLRHEKALIVKLVDVV DFNGSFLARLRDLVGANPIILVVTKVDLLPRDTDLNCVGDWVVEATTKKKLSVLSVHLTSSKSLVGIAGVVSEIQREKKGRDVYILGSANVGKSAFISAL LKTMALRDPAAAAARKYKPIQSAVPGTTLGPIQIDAFLGGGKLYDTPGVHLHHRQAAVVHSEDLPALAPRSRLKGQSFPNSKVASENRMAEKIQSNGLNG FSIFWGGLVRVDILKVLPETCLTFYGPKALQIHVVPTDKADKFYQKELGVLLTPPTGKERAQDWRGLELEQQLQVKFEEVERPASDVAISGLGWIAVEPV SKSLRRSDINLEETIKELHLAVHVPKPVEVFVRPPLPVGKAGAQWYQYRELTEKEEELRPKWHY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47450		RIF1, ATNOA1, A...	RESISTANT TO INHIBITION WITH F...		Potri.001G124900 [exp]	0	1
AT3G04260		PDE324, PTAC3	PIGMENT DEFECTIVE 324, plastid...		Potri.019G025100 [exp]	1.41	0.9735
AT2G30695			unknown protein		Potri.013G125500 [exp]	2.23	0.9755
AT5G08540			unknown protein		Potri.010G254800 [exp]	2.44	0.9702
AT1G59990		RH22, EMB3108	RNA helicase 22, EMBRYO DEFECT...		Potri.008G193800 [exp]	3.87	0.9666
AT4G33760			tRNA synthetase class II (D, K...		Potri.009G084300 [exp]	4.47	0.9618
AT1G32580			plastid developmental protein ...		Potri.008G169900 [exp]	4.89	0.9644
AT2G04030		Hsp88.1, AtHsp9...	HEAT SHOCK PROTEIN 88.1, EMBRY...		Potri.008G112700 [exp]	6.00	0.9625
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Potri.006G205000 [exp]	6.32	0.9668
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Potri.002G029600 [exp]	7.48	0.9632
AT1G10522			unknown protein		Potri.010G094900 [exp]	8.48	0.9598

Compare expression of checked genes

Potri.001G124900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.