Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62410 1772 / 0 TTN3, ATSMC4, ATCAP-E1, SMC2 TITAN 3, structural maintenance of chromosomes 2 (.1) AT3G47460 1745 / 0 ATSMC2 Structural maintenance of chromosomes (SMC) family protein (.1) AT2G27170 193 / 8e-50 SMC3, TTN7 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2) AT3G54670 117 / 2e-26 ATSMC1, TTN8 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) AT5G48600 114 / 2e-25 ATSMC4, SMC4, ATCAP-C, ATSMC3 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) AT5G15920 50 / 2e-05 EMB2782, SMC5 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1) AT5G61460 44 / 0.0009 SMC6B, ATRAD18, MIM STRUCTURAL MAINTENANCE OF CHROMOSOMES 6B, hypersensitive to MMS, irradiation and MMC, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G108400 [exp] 2117 / 0 AT5G62410 1732 / 0.0 TITAN 3, structural maintenance of chromosomes 2 (.1) Potri.009G155200 [exp] 167 / 9e-42 AT2G27170 1665 / 0.0 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2) Potri.017G083200 [exp] 99 / 9e-21 AT5G48600 1737 / 0.0 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) Potri.001G262600 [exp] 69 / 2e-11 AT5G15920 1427 / 0.0 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1) Potri.005G224900 [exp] 51 / 5e-06 AT3G54670 1540 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027215 [exp] 1895 / 0 AT3G47460 1795 / 0.0 Structural maintenance of chromosomes (SMC) family protein (.1) Lus10038926 [exp] 175 / 8e-48 AT2G45010 342 / 4e-118 PLAC8 family protein (.1.2) Lus10036169 [exp] 119 / 8e-27 AT2G27170 1368 / 0.0 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2) Lus10005240 [exp] 96 / 1e-19 AT5G48600 1804 / 0.0 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) Lus10013583 [exp] 81 / 1e-15 AT3G54670 410 / 2e-133 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10030681 [exp] 67 / 9e-11 AT5G48600 1723 / 0.0 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) Lus10039590 [exp] 66 / 2e-10 AT5G15920 1175 / 0.0 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1) Lus10029476 [exp] 66 / 3e-10 AT5G15920 1172 / 0.0 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1) Lus10013582 [exp] 51 / 2e-06 AT3G54670 292 / 2e-91 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10021268 [exp] 52 / 5e-06 AT3G54670 849 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06470 [poplar] [flax] SMC_hinge SMC proteins Flexible Hinge Domain CL0023 [poplar] [flax] P-loop_NTPase PF13476 [poplar] [flax] AAA_23 AAA domain
Representative CDS sequence Show only first row Show all	>Potri.001G125000.2 pacid=42788867 polypeptide=Potri.001G125000.2.p locus=Potri.001G125000 ID=Potri.001G125000.2.v4.1 annot-version=v4.1 ATGTATGTAAAGGAGATATGTTTAGAGGGGTTCAAATCTTACGCAACAAGAACAGTTGTACAAGGATTTGACCCCTTTTTCAATGCAATCACGGGGCTGA ACGGGTCGGGCAAGTCGAATATTTTGGATTCGATTTGCTTTGTCTTGGGTATAACTAATCTGCAGCAAGTTAGGGCTTCGAATTTGCAGGAGTTAGTGTA CAAGCAAGGACAAGCAGGGATCACTAAAGCAACAGTGTCAATCGTGTTCGATAATTCTGACAGGAGCAGGAGTCCTCTTGGGTACGAGAATCATTCTGAG ATTACTGTTACAAGACAGATTGTGGTTGGTGGAAGGAACAAGTATTTGATCAATGGAAAGCTAGCCCAGCCTAGCCAAGTTCAAAACCTTTTTCATTCGG TGCAGCTGAATGTTAACAATCCACATTTTCTCATTATGCAAGGACGTATTACTAAGGTCTTAAATATGAAACCTCCAGAGATCTTATCTATGCTTGAAGA GGCTGCTGGGACAAGAATGTATGAGACAAAGAAAGAGTCTGCATTGAAAACACTAGAGAAGAAACAGAGCAAGGTGGTTGAAATTAACAAGCTTCTTGAC CAGGAGATACTTCCAGCTCTGGAAAAGTTGAGGAAGGAGAGGATGCAATATATGCAATGGGCCAATGGCAATGCTGAATTAGATCGACTCAAAAGGTTTT GTGTTGCTTATGATTATGTTCAAGCAGAGAAAATCAGAGACAGTGCAGTTGGTGAGGTGGAACAAATGAAGGCCAAAATTGCTGAGATTGACCATAATGC AGATCGAATGCGGGTGGAAATACAACAAAAGGAGACCGAAGTATCAAAACTGACTGCTGAAAAGGAAGCCAGTATGGGTGGGGAAGCAAAAACTCTGTCA GAGAATGTAGATGTGCTCGCTCAAGATCTTGTGCGAGAGGTATCTGTGTTGAATAACAAAGAGGATACTTTAAGGAGTGAACAGGAGAATGCTGAAAAGA TTGTTCATAGTATTGAAGACTTGAAGCAGTCTGTAGAAGAGAGGGCCACTGCTGTTAAAAAGTCTGAAGAAGGAGCAGCTGATCTCAAAAAGAGAGTTGA AGATTTTTTCAAGAGTTTGGAAAATTATGAGAAGGAATACCAAGGTGTACTAGCTGGGAAGAGCAGTGGTGATGAGGAGAAATGCCTTGAAGATCAACTG GGTGAAGCGAAGGTTGCAGTTGGAAATGCTGAGACAGAATTGAAACAATTGAAAACAAAAATTAACCATTGTGAGAGAGAGCTGAAAGAGAAAACACATC AGTTAATGTCAAAGTGTGAAGAAGCTGCTGCTGTACAGAATGAGCTTAGTGCTAGAAGGAAAGATGTGGAAAATGCTAAATCGGCAATGGAATCTCTTCC ATATAAGGAAGGCCAGATGGAAGCTTTACAGAAGGATCGTGCATCTGAATTGGAACTAGTGCAGAAGTTGAAAGATGAAATACGAGACCTTTCAGCGCAA CTATCAAATCTTCAATTCACATACCGGGATCCTGTGAGAAACTTTGATAGGTCAAAAGTAAAAGGCGTGGTAGCTAAACTTATTAAAGTAAAGGACAGAT CCACAATGACTGCCCTAGAGGTTACTGCAGGTGGAAAGTTATATAATGTTGTTGTAGACACTGAGAGCACTGGAAAACAACTTCTTCAAAATGGTGATCT CCGTAGAAGAGTCACAATTGTCCCCTTAAATAAAATTCAATCCCATACTGTACACCCTAGGATTCAGCAGGCTGCTGTTAGATTGGTTGGCAAGGAGAAT GCAGAACTGGCACTTTCTTTGGTTGGCTATGATGAGGAATTGAAGACTGCTATGGAATATGTTTTTGGTTCAACATTTGTTTGCAAAACCATGGATGCTG CAAAGGAGGTTGCTTTCAGTCGAGAAATCCGCACTCCTAGTGTCACTCTTGAAGGCGACATCTTCCAGCCAAGCGGTCTTTTAACTGGCGGAAGCCGCAT GGGTGGAGGCTATCTGTTAAGGCAACTCCATGAATGGGCAGAGGCTGAATCAAATCTTCTACTACGTCAGAGAAGGTTATCTGAAATTGAAGCAAAGATT ACAGAGCTCTTGCCAGTTCATAAAAAGTTTGTGGACCTTAAAAAACAGCTAGAACTTAAGTTGTATGATCTTTCGTTATTTCAGGGAAGGGCTGAGCAAA ACGAGCACCATAAGCTTGGTGAAGTGGTAAAGAAGATTGAACAGGAGCTTGAAGAAGCAAAGTTTGCAGCCAAACAAAAGGAAATTTTGTATAATGAGTG TGTTAGTACAGTGTCAAAGCTTGAGAAATCAATCAAAGAGCACGATAATAACCGAGAAGGCAGGCTCAAAGACTTGGAGAAACAAATTAAGGCTACAAAA GCACAAATGAAGTCAGCTTCAAAGGACCTCAAGGGGCATGAAAATGAAAGAGAGAGACTTATCATGGAACAGGAAGCAGTCGTGAAAGAACATGCATCTT TGGAGAGTCAATTAGATTCTTTGAGAACACAAATCAGCCGTCTCAATTTTGAAATAGAAGAACAAAAAGCCAAGGTTGCTTCCACACGCAATAATCATGA TCAGGCTCAATCTGAGCTCGATTCAATCCGTCTAAAGATGTTGGAATGTGATTCCCAAATTAGTAGCATTCTCAAGGAGCAGCAAAAACTTCAACATAAA CTTGGTGAGACAAAGCTTGAAAGGAAGAAGTTGGAGAATGAGGTGAAAAGAATGGAAATGGAGCAGAAAGATTGCTCTACGAAGGTAGATAGATTGATAG AGAAGCATGCCTGGATTGCTTCTGAGAAGCAGCTATTTGGGAGAAGTGGGACTGATTATGAATTTATGTCCCGCGATCCCACTAAAGCAAGAGAGGAACT TGAGAGATTGCAAGCGGAGCAATCAGGGCTTGAGAAAAGGGTGAACAAGAAAGTTATGGCAATGTTTGAAAAAGCAGAAGACGAGTACAATGATTTGATG TCGAAGAAAAACATTATTGAGAATGACAAGTCTAAAATCAAGAAGGTGATTGAAGAGCTAGATGAGAAGAAGAAGGAGACTCTCAAAGTTACATGGGTTA AAGTAAACAATGACTTCGGATCTGTCTTTTCCACTCTGTTGCCGGGCACCATGGCAAAGCTAGAACCTCCTGAAGGTTGCAGTTTCCTAGACGGTCTTGA GGTTCGTGTTGCTTTTGGAAGTGTCTGGAAACAGTCGTTGTCAGAACTAAGTGGAGGCCAACGCTCTCTGCTTGCTCTATCTCTAATCTTGGCATTGCTT CTCTTCAAGCCAGCTCCACTTTATATTCTAGATGAGGTTGATGCGGCTCTTGATTTAAGCCACACACAGAACATAGGGAGAATGATCAAAGCTCACTTCC CGCACTCCCAGTTTATCGTGGTTTCACTGAAAGAAGGCATGTTCAACAATGCCAACGTTCTTTTCCGGACAAAATTTGTGGATGGTGTTTCCACTGTACA GAGGACTGTTGCCGCTAAGCAGAACAAGTGA
AA sequence Show only first row Show all	>Potri.001G125000.2 pacid=42788867 polypeptide=Potri.001G125000.2.p locus=Potri.001G125000 ID=Potri.001G125000.2.v4.1 annot-version=v4.1 MYVKEICLEGFKSYATRTVVQGFDPFFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSIVFDNSDRSRSPLGYENHSE ITVTRQIVVGGRNKYLINGKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETKKESALKTLEKKQSKVVEINKLLD QEILPALEKLRKERMQYMQWANGNAELDRLKRFCVAYDYVQAEKIRDSAVGEVEQMKAKIAEIDHNADRMRVEIQQKETEVSKLTAEKEASMGGEAKTLS ENVDVLAQDLVREVSVLNNKEDTLRSEQENAEKIVHSIEDLKQSVEERATAVKKSEEGAADLKKRVEDFFKSLENYEKEYQGVLAGKSSGDEEKCLEDQL GEAKVAVGNAETELKQLKTKINHCERELKEKTHQLMSKCEEAAAVQNELSARRKDVENAKSAMESLPYKEGQMEALQKDRASELELVQKLKDEIRDLSAQ LSNLQFTYRDPVRNFDRSKVKGVVAKLIKVKDRSTMTALEVTAGGKLYNVVVDTESTGKQLLQNGDLRRRVTIVPLNKIQSHTVHPRIQQAAVRLVGKEN AELALSLVGYDEELKTAMEYVFGSTFVCKTMDAAKEVAFSREIRTPSVTLEGDIFQPSGLLTGGSRMGGGYLLRQLHEWAEAESNLLLRQRRLSEIEAKI TELLPVHKKFVDLKKQLELKLYDLSLFQGRAEQNEHHKLGEVVKKIEQELEEAKFAAKQKEILYNECVSTVSKLEKSIKEHDNNREGRLKDLEKQIKATK AQMKSASKDLKGHENERERLIMEQEAVVKEHASLESQLDSLRTQISRLNFEIEEQKAKVASTRNNHDQAQSELDSIRLKMLECDSQISSILKEQQKLQHK LGETKLERKKLENEVKRMEMEQKDCSTKVDRLIEKHAWIASEKQLFGRSGTDYEFMSRDPTKAREELERLQAEQSGLEKRVNKKVMAMFEKAEDEYNDLM SKKNIIENDKSKIKKVIEELDEKKKETLKVTWVKVNNDFGSVFSTLLPGTMAKLEPPEGCSFLDGLEVRVAFGSVWKQSLSELSGGQRSLLALSLILALL LFKPAPLYILDEVDAALDLSHTQNIGRMIKAHFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTVAAKQNK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62410		TTN3, ATSMC4, A...	TITAN 3, structural maintenanc...		Potri.001G125000 [exp]	0	1
AT5G52910		ATIM	timeless family protein (.1)		Potri.015G024300 [exp]	1.00	0.9529
AT1G27880			DEAD/DEAH box RNA helicase fam...		Potri.010G056500 [exp]	3.00	0.9321
AT5G49160		MET2, DMT1, DMT...	METHYLTRANSFERASE I, METHYLTRA...		Potri.004G134000 [exp]	3.16	0.9343	DMT901,Pt-MET1.2
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Potri.019G129900 [exp]	3.46	0.9421	Pt-SOM1.1,CHR905
AT5G46740		UBP21	ubiquitin-specific protease 21...		Potri.001G142000 [exp]	5.65	0.9378	Pt-UBP21.2
AT1G69770		CMT3	chromomethylase 3 (.1)		Potri.001G009600 [exp]	5.65	0.9321
AT3G09080			Transducin/WD40 repeat-like su...		Potri.006G096400 [exp]	5.74	0.9266
AT3G26050			TPX2 (targeting protein for Xk...		Potri.010G053200 [exp]	6.48	0.9249
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Potri.001G264000 [exp]	7.14	0.9416	TOP2.2
AT2G21790		ATRNR1, RNR1, C...	CRINKLY LEAVES 8, RIBONUCLEOTI...		Potri.007G076700 [exp]	7.34	0.9137

Compare expression of checked genes

Potri.001G125000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.