Plant FIBer expression Database

Potri.001G125100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G108301
[exp]
92 / 3e-25 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G125100.1 pacid=42787623 polypeptide=Potri.001G125100.1.p locus=Potri.001G125100 ID=Potri.001G125100.1.v4.1 annot-version=v4.1
ATGGCAACGGCTTCGACTTTGAAATCGTCTTCGTTCTCAGTTTTTCCATCTGAAACAATTTTCTTTACACAGATACGTGATCAAGGAGTCCATGTTTGCT
TATTATATATACGTATGTTCTTAACAAACGTGCTTTGTATTACAAGAAAAATGGCTTCTAAGAAATTTGTGTGTTCTTGGAATGTTTTCTTGATTGTCAT
GCTCCTTCTGGTCTCTGCAATGGGATCAAGGGATCTGCCAAAGACCACCATGCCTCGTATGACTCGCGAAAAGGCTTATCATCCTAGGATACTTCAGGGA
TGGAAGAGTCATAGAGGAGGAGTTCCTAGGGATGGCCATTACTAG
AA sequence
>Potri.001G125100.1 pacid=42787623 polypeptide=Potri.001G125100.1.p locus=Potri.001G125100 ID=Potri.001G125100.1.v4.1 annot-version=v4.1
MATASTLKSSSFSVFPSETIFFTQIRDQGVHVCLLYIRMFLTNVLCITRKMASKKFVCSWNVFLIVMLLLVSAMGSRDLPKTTMPRMTREKAYHPRILQG
WKSHRGGVPRDGHY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G125100
[exp]
0 1
AT2G16900 Arabidopsis phospholipase-like... Potri.009G136400
[exp]
23.49 0.8266
AT3G01980 NAD(P)-binding Rossmann-fold s... Potri.001G327800
[exp]
29.08 0.7945
AT5G38210 Protein kinase family protein ... Potri.017G118250
[exp]
30.00 0.8395
AT4G01500 B3 NGA4 NGATHA4, AP2/B3-like transcrip... Potri.012G013700
[exp]
37.41 0.8292
Potri.004G104600
[exp]
60.62 0.8258
AT2G46620 P-loop containing nucleoside t... Potri.002G175600
[exp]
72.86 0.7948
AT1G35520 ARF ARF15 auxin response factor 15 (.1) Potri.012G012950
[exp]
95.39 0.7848
AT1G01980 ATSEC1A FAD-binding Berberine family p... Potri.011G158500
[exp]
95.89 0.7826
AT1G66940 protein kinase-related (.1.2.3... Potri.017G118401
[exp]
117.98 0.7928
AT5G38710 Methylenetetrahydrofolate redu... Potri.004G106400
[exp]
127.67 0.7857

Potri.001G125100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.