Plant FIBer expression Database

Potri.001G125200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G24080 248 / 2e-73 KRR1 family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028084
[exp]
409 / 2e-135 AT3G24080 347 / 2e-111 KRR1 family protein (.1.2)
Lus10025633
[exp]
403 / 4e-133 AT3G24080 347 / 2e-111 KRR1 family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05178 Kri1 KRI1-like family
PF12936 Kri1_C KRI1-like family C-terminal
Representative CDS sequence
>Potri.001G125200.1 pacid=42790643 polypeptide=Potri.001G125200.1.p locus=Potri.001G125200 ID=Potri.001G125200.1.v4.1 annot-version=v4.1
ATGCCGCTGAAGCAGCTATTCGACGATGCCAACAACGACGACGACGTATCGAAGATTGAAATTGACAAGGAGTTCGCTAAAAGATACGAACACAACAAGA
AACGGGAAGCTCTCCAGAGATACGAACAGCTGCAAAAGGAAGGACTGGTTGATGAATCCGAATCAGGGTCAGAGTCATCATCATCGGATGAGACAGACAT
TAAGAAGACTGATATCAAGTTTTTTGATAATTTACTCAAGGTAAAAAATCGTGATCCTTCTCTATATAGTAACGCCAAACTCTTTGAATCTGATAGTAGT
GATACAGAAGAGGAAGATATTAAGGTTGGTAATGAAAAACATACGAAAAAGAAACCTATGTATTTGAAGGATGTGATGGCGAGGCATTTGATTGAGAAAG
GGCCTGAGCTTGATGATGAGGAAGGGTCGTCAATTAAGACTAAGAGGGCTGATAAGAGTTATAACGACGAACAAGAGGAGTTAAGGAAGGCCTTTTTGGA
TGCGGTGGAGGATGAGGAAGAGGATGGAGAGCAGGAGTTTTTGAAGTTGAAAGAGAGGAAGAATGAGGAGGTGAGTGGGGATGGGAATGCTGCTGATGCT
GATGGTGTGGACTTTGAGAAGAAGCTGGGTGATTATTTTGGTGGGGAAGGGGAGTTGGATGAGGGAAGCATGTTTTTGAGGGATTTTTTTAAGAATAAGA
TGTGGCTTGGTAAGGATGAAAGGGATGATGTTGGGGAAGATGAGGTGGATGAGTTGTTGAGAGATGAGGAGGAGGTTGAGAGGCAAGAGAAGTACGAGGA
GAGTTATAATTTTAGGTATGAGGAGAGTGTGGGGGATAGAGTGTTGGGTCATTCGAGGAAAGTGGAGGGGTCGGTGAGGAAGAAGGATAATTCGAGGAAA
GAGCAGAGGAAGAACAAGGAGGAGAGGATGAAGATTGCGGAAATGGAGAGGAAAGAGGAGTTGAAGCATTTGAAGAATTTGAAGAAGAAGGAGATGAAGG
AGAAGATGAAGAAAGTCATGGAGGTTGCAGGGTTTAAGGATGATAATGAGTTTCCGTTAGATTTGGAGGACGAATTTGATCCTGATGAGTATGATAAGAT
GATGAAGAAGGCTTTCGATGTGCAGTATTACGAAGCAGAGGATGTGGAGCCGGGGTTCGGGAGTGATGATGATAATGATGAGATGGAGAAGCCAGATTTT
GATAAGGAGGATGAGTTGCTTGGACTTCCTAAAGATTGGGACATGATTGACTCTAGTGATGGGTTTTTAGCTGCAAGGGAAAGGAGTTTGAAACTGAAGC
AGCAGAAAGGGAATGACTGCTATGAGAAAGAAGAAGGAAGTGGAGAAGAACGGAGTGAGGAAAGTAAGCGGAAGAGGAAGCGAAAAATGTCACTTGTGCA
GAAAGTTAAAGAGGAAATGATGGAAGAATACTACAAGTTGGACTATGAGGGTACTATTGGAGATTTAAAGACGAGGTTTAAGTATGCTAAAGTGGATCCT
AACAAGTTTGGGTTGAAGACGGAAGAGATATTAGAGATGGATGACAAGGAGTTGAATCAATATGTTTCTATTAAAAAACTTGCACCCTATATGGATAAGG
AATGGAAGGTGCCTAGTACTAAGAAACACCAGCAAAAGATGATGATTAGGGAGCGTTTGCAGGAGAAATTTGACAAGAAGAACAAGACAAAACATAAGAA
AGATAAGCCATCCTCAGTTCTGGGTTCCAAACAAGATGGGACAGAAAAGCTGGACGAATCAAATGTGGATACTGGCAACTTATCCAGGAAAGCCAAAAGA
AGACGCCGCCAGGCAGAACTGAAGTTATCACGCCCTCGGCTCATTGCCTATGGGAAGGTCCAATCTTAA
AA sequence
>Potri.001G125200.1 pacid=42790643 polypeptide=Potri.001G125200.1.p locus=Potri.001G125200 ID=Potri.001G125200.1.v4.1 annot-version=v4.1
MPLKQLFDDANNDDDVSKIEIDKEFAKRYEHNKKREALQRYEQLQKEGLVDESESGSESSSSDETDIKKTDIKFFDNLLKVKNRDPSLYSNAKLFESDSS
DTEEEDIKVGNEKHTKKKPMYLKDVMARHLIEKGPELDDEEGSSIKTKRADKSYNDEQEELRKAFLDAVEDEEEDGEQEFLKLKERKNEEVSGDGNAADA
DGVDFEKKLGDYFGGEGELDEGSMFLRDFFKNKMWLGKDERDDVGEDEVDELLRDEEEVERQEKYEESYNFRYEESVGDRVLGHSRKVEGSVRKKDNSRK
EQRKNKEERMKIAEMERKEELKHLKNLKKKEMKEKMKKVMEVAGFKDDNEFPLDLEDEFDPDEYDKMMKKAFDVQYYEAEDVEPGFGSDDDNDEMEKPDF
DKEDELLGLPKDWDMIDSSDGFLAARERSLKLKQQKGNDCYEKEEGSGEERSEESKRKRKRKMSLVQKVKEEMMEEYYKLDYEGTIGDLKTRFKYAKVDP
NKFGLKTEEILEMDDKELNQYVSIKKLAPYMDKEWKVPSTKKHQQKMMIRERLQEKFDKKNKTKHKKDKPSSVLGSKQDGTEKLDESNVDTGNLSRKAKR
RRRQAELKLSRPRLIAYGKVQS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G24080 KRR1 family protein (.1.2) Potri.001G125200
[exp]
0 1
AT1G74250 DNAJ heat shock N-terminal dom... Potri.009G018400
[exp]
1.41 0.9397
AT1G75335 unknown protein Potri.013G126701
[exp]
3.00 0.9140
AT5G47680 AtTRM, TRM10 tRNA modification 10, unknown ... Potri.006G004900
[exp]
3.46 0.8670
AT3G14180 Trihelix ASIL2 Arabidopsis 6B-interacting pr... Potri.003G200000
[exp]
6.78 0.8333
AT1G61730 GeBP DNA-binding storekeeper protei... Potri.005G075000
[exp]
9.16 0.8813
AT4G25340 ATFKBP53 FK506 BINDING PROTEIN 53 (.1.2... Potri.015G130900
[exp]
14.96 0.8210
AT5G43490 unknown protein Potri.017G058600
[exp]
15.49 0.8953
AT1G21200 Trihelix sequence-specific DNA binding ... Potri.001G019200
[exp]
16.49 0.7623
AT5G48610 unknown protein Potri.017G058701
[exp]
20.24 0.8946
AT1G55460 C2H2ZnF DNA/RNA-binding protein Kin17,... Potri.010G204900
[exp]
20.83 0.7938

Potri.001G125200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.