Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62420 445 / 2e-158 NAD(P)-linked oxidoreductase superfamily protein (.1) AT2G37770 295 / 2e-99 ChlAKR, AKR4C9 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) AT2G37790 282 / 3e-94 AKR4C10 Aldo-keto reductase family 4 member C10, NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G59960 273 / 1e-90 NAD(P)-linked oxidoreductase superfamily protein (.1) AT3G53880 266 / 4e-88 AKR4C11 Aldo-keto reductase family 4 member C11, NAD(P)-linked oxidoreductase superfamily protein (.1) AT2G37760 259 / 2e-85 AKR4C8 Aldo-keto reductase family 4 member C8, NAD(P)-linked oxidoreductase superfamily protein AT1G59950 251 / 6e-82 NAD(P)-linked oxidoreductase superfamily protein (.1) AT5G01670 215 / 4e-68 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) AT2G21260 214 / 1e-67 NAD(P)-linked oxidoreductase superfamily protein (.1) AT2G21250 210 / 3e-66 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G193100 [exp] 278 / 1e-92 AT1G59960 420 / 3e-148 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G097000 [exp] 278 / 1e-92 AT1G59960 405 / 2e-142 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.006G090600 [exp] 276 / 4e-92 AT2G37770 503 / 0.0 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.016G102300 [exp] 267 / 3e-88 AT2G37770 398 / 5e-140 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.016G102032 [exp] 250 / 1e-81 AT2G37770 424 / 2e-150 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.016G102100 [exp] 229 / 1e-73 AT2G37770 400 / 5e-141 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.017G070600 [exp] 218 / 4e-69 AT2G37770 438 / 6e-156 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.009G125100 [exp] 200 / 2e-62 AT2G21250 526 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Potri.008G144600 [exp] 200 / 8e-62 AT2G37770 251 / 1e-81 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031162 [exp] 498 / 3e-179 AT5G62420 431 / 1e-152 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10031739 [exp] 489 / 1e-175 AT5G62420 425 / 2e-150 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10027216 [exp] 474 / 4e-170 AT5G62420 429 / 2e-152 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10024353 [exp] 271 / 9e-90 AT2G37770 491 / 1e-176 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10010720 [exp] 268 / 2e-88 AT1G59960 410 / 2e-144 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10029208 [exp] 265 / 2e-87 AT1G59960 406 / 7e-143 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10010884 [exp] 264 / 3e-87 AT2G37770 484 / 5e-174 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10010885 [exp] 264 / 4e-87 AT2G37770 502 / 0.0 Chloroplastic aldo-keto reductase, Aldo-keto reductase family 4 member C9, NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2) Lus10011056 [exp] 245 / 1e-79 AT1G59960 325 / 8e-111 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10030946 [exp] 242 / 3e-78 AT1G59960 317 / 1e-107 NAD(P)-linked oxidoreductase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00248 [poplar] [flax] Aldo_ket_red Aldo/keto reductase family
Representative CDS sequence Show only first row Show all	>Potri.001G125400.1 pacid=42793164 polypeptide=Potri.001G125400.1.p locus=Potri.001G125400 ID=Potri.001G125400.1.v4.1 annot-version=v4.1 ATGATGAACAACGAAGTGCGTCTGAATTGCGGCATTAACATGCCAGTCCTGGGACTGGGCACTTATTCCTACCCTAATGATAGGCAGACGACGGAGCTAG CCATCGATATGGCACTCAAGATGGGTTACAGGCATTTTGACACAGCAAAGATTTATGGTTCTGAGCCGGCTGTGGGGCATGCGTTAACAGAAGCGATTCT TGATCAAACAGTAGACAGAGAGGGGATTTTTGTTACATCTAAACTGTGGGGGAGTGATCATCATGATCCTGTCTCAGCACTCAGGCAAACTCTAAAGAAC ATGGGCATGGAATATTTGGACATGTATCTAGTGCATTGGCCAGTGAAGCTGAAGCCTTGGAATTACTCTGCCGTGCCTCCTGAAGATGACTTTGAGCCAT TAGACCTTGAGTCCACATGGGCCGGCATGGAAAAATGTTTGGACTTGGGATTGTGCAGGTGCATTGGCGTCAGCAATTTCTCCAGCAAGAAGATCCAAAG CTTGTTGGATTTTGCCTCAGTACCTCCAGCTGTCAATCAGGTGGAAATGCATCCAATGTGGAGGCAAAGAAAACTAAGAGATTTTTGTGCGGACTACAAG ATCCATGTAAGTGCTTATTCGCCACTTGGTGGCCCTGGAAATGCATGGGGAACAACCGCCGTGGTTGAAAATCCAATAATACAGTCCATCTCTCGCAAGC ACAAGACGACCCCAGCTCAGGTGGCGTTACAGTGGGGGCTGTCAAAGGGATCAAGCATGATAGTGAAGAGTTTTAATCAGAAGAGGTTGAAGGAAAACAT GGAGGCCTTGAATGTAAAACTGGATGATCAAGATCTCACTGACATTGAGAAACTGGAGGAATGGAAGATCATGAGAGGAGAATTTCTTGTTAACGACTCA ACAAGTCCTTATAAGACAATTGAAGATCTATGGGATGGTGAGATTTGA
AA sequence Show only first row Show all	>Potri.001G125400.1 pacid=42793164 polypeptide=Potri.001G125400.1.p locus=Potri.001G125400 ID=Potri.001G125400.1.v4.1 annot-version=v4.1 MMNNEVRLNCGINMPVLGLGTYSYPNDRQTTELAIDMALKMGYRHFDTAKIYGSEPAVGHALTEAILDQTVDREGIFVTSKLWGSDHHDPVSALRQTLKN MGMEYLDMYLVHWPVKLKPWNYSAVPPEDDFEPLDLESTWAGMEKCLDLGLCRCIGVSNFSSKKIQSLLDFASVPPAVNQVEMHPMWRQRKLRDFCADYK IHVSAYSPLGGPGNAWGTTAVVENPIIQSISRKHKTTPAQVALQWGLSKGSSMIVKSFNQKRLKENMEALNVKLDDQDLTDIEKLEEWKIMRGEFLVNDS TSPYKTIEDLWDGEI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62420			NAD(P)-linked oxidoreductase s...		Potri.001G125400 [exp]	0	1
AT1G45688			unknown protein		Potri.007G045000 [exp]	3.74	0.8536
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Potri.005G244100 [exp]	10.67	0.8510	Pt-ATEXPA11.1,PtrEXPA18
AT1G66870			Carbohydrate-binding X8 domain...		Potri.014G114500 [exp]	14.38	0.8837
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.007G144000 [exp]	29.12	0.8405
					Potri.006G258250 [exp]	37.46	0.8398
AT2G47540			Pollen Ole e 1 allergen and ex...		Potri.014G126500 [exp]	40.98	0.8011
AT5G35110			unknown protein		Potri.018G113901 [exp]	45.21	0.8362
					Potri.001G388100 [exp]	49.95	0.8293
					Potri.001G387900 [exp]	52.05	0.8336
AT5G35550	MYB	ATTT2, TT2, AtM...	TRANSPARENT TESTA 2, MYB DOMAI...		Potri.006G221500 [exp]	55.85	0.7992	MYB183

Compare expression of checked genes

Potri.001G125400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.