Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07670 510 / 2e-178 RNI-like superfamily protein (.1) AT5G51380 487 / 3e-169 RNI-like superfamily protein (.1) AT5G51370 457 / 3e-158 RNI-like superfamily protein (.1.2) AT4G15475 82 / 2e-16 F-box/RNI-like superfamily protein (.1) AT2G25490 73 / 2e-13 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G23340 67 / 1e-11 RNI-like superfamily protein (.1) AT5G25350 61 / 1e-09 EBF2 EIN3-binding F box protein 2 (.1) AT5G01720 55 / 8e-08 RNI-like superfamily protein (.1) AT1G77000 53 / 2e-07 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) AT3G07550 52 / 6e-07 RNI-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G107900 [exp] 817 / 0 AT5G07670 525 / 0.0 RNI-like superfamily protein (.1) Potri.002G143200 [exp] 473 / 1e-163 AT5G07670 466 / 3e-161 RNI-like superfamily protein (.1) Potri.014G059100 [exp] 459 / 6e-158 AT5G07670 451 / 2e-155 RNI-like superfamily protein (.1) Potri.006G254100 [exp] 76 / 3e-14 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.006G105400 [exp] 72 / 4e-13 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.016G128400 [exp] 72 / 5e-13 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.018G027700 [exp] 69 / 3e-12 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.005G088800 [exp] 66 / 3e-11 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.005G022600 [exp] 64 / 2e-10 AT5G27920 626 / 0.0 F-box family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031165 [exp] 601 / 0 AT5G07670 530 / 0.0 RNI-like superfamily protein (.1) Lus10031742 [exp] 586 / 0 AT5G07670 518 / 0.0 RNI-like superfamily protein (.1) Lus10027218 [exp] 578 / 0 AT5G07670 514 / 7e-180 RNI-like superfamily protein (.1) Lus10031164 [exp] 577 / 0 AT5G07670 525 / 0.0 RNI-like superfamily protein (.1) Lus10031741 [exp] 576 / 0 AT5G07670 521 / 0.0 RNI-like superfamily protein (.1) Lus10038927 [exp] 570 / 0 AT5G07670 516 / 5e-171 RNI-like superfamily protein (.1) Lus10027217 [exp] 545 / 0 AT5G07670 508 / 3e-178 RNI-like superfamily protein (.1) Lus10012764 [exp] 83 / 2e-16 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10002014 [exp] 77 / 9e-15 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1) Lus10040998 [exp] 77 / 1e-14 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G125800.1 pacid=42790166 polypeptide=Potri.001G125800.1.p locus=Potri.001G125800 ID=Potri.001G125800.1.v4.1 annot-version=v4.1 ATGTCGTTTTTTACCGAGAAAACGTTGAAGAAGAAGAAGAGACCACCAAGGTGGTCACACCTGTGGCTCAAAAACACAAAACCATTGAAGCATGCTTTAT TCGCTATGCAGCTCCAGTCTGTCTCTAGCCCGCCAACGCCAACGCCAACACCCACACTCACACCACAACAGCAGCAACAAGCAGACCCCAACACCAAACT CAGAGACAAAACAGGAACCCTCATCTCCAATCTCCCCGATATTGACCGTACACTTCTCTTAGGTGATGATCTCCTCTTAAAAATCCTCTCTAAATTGCCT GATTCTCAAAGAAACCCTAATTCACTTGTTTGTAAACGGTGGCTTAATCTCCAAGGCCGTCTTGTTAGGTCTTTAAAGGTTTTAGATTGGGAGTTTCTTG AGTCTGGCCGTTTACTTTCAAGATTCCCAAATTTGACCCATGTGGATTTGCTTAATGGATGTGTTGTTAGACCCCATGATTGCTGTGTCCGGTTGAGTCA TAGGGTTTTTCAGATGGATATAAATTCTGGGGTTTCTGGGTTCTTACCGGATTGGCGTGTTTGCGAAGAGAATTTGTCGCCTGTTGAGGTTGTTGATAGA GGGCTTAGAGTTCTGGCTTCAGGTTGTCCGAATTTGAGAAAGCTTGTAGTGGTTGGTGCCAGTGAGATAGGGTTGTTAAGTTTTGCTGAAGATTGTTTGA CATTGCAAGAATTGGAGTTACATAAGTGTAATGATGATGCCTTGCGCGGGATTGCTGCTTGTATGAATTTGCAAATTCTGAAACTTGTTGGAAATGTGGA TGGATTTTATGGTTCTTTGGTTTCGGATATTGGGTTAACGATTTTGGCTCAAGGCTGTAAGAGGTTAGTGAAGCTTGAGTTGAGTGGGTGTGAGGGTAGT TTTGATGGGATTAAGGCCATTGGACAATGTTGTCAGATGCTTGAGGAACTCACTATTTGCGATCATAGGATGGATTGTGGGTGGTTGGCTGGGCTTTCAT ACTGTGAGAATTTGAAGACTTTGAGGTTTTTGTCGTGTAAGAGAATTGATCCCAGCCCAGGGCCGGATGAGTATTTGGGTTGTTGTCCAGCTCTTGAGAG GTTGCATTTGCGGAAGTGTCAATTGAGAGATAAAAAGAGCCTTAAAGCCTTGTTTAAGGTGTGCGAAGCTGTGAGGGAGATTGTTGTTCAGGACTGTTGG GGATTGGATAATGATATGTTTAGCATGGCAAGTATTTGCAGGAAGGTAAAGTTTTTATCTCTGGAAGGATGCTCCTTGTTGACAACAGAAGGCTTGGAAT CAGTACTTCTTACCTGGAATGAACTTCAACATTTTAGAATAGAGTCATGCAAGAACATAAAGGATGGTGAAGTCTCTCCAGCTCTTTCAACCTTTTTCTC TGTTCTTAAGGAGTTGAGATGGAGGCCAGATACCAGATCTCTTCTTGCATCAAGTCTTATGGGGACTGGCATGGGAAAGAAAGGAGGCAAATTTTTCAAG AAGAATCCACGCCTCGATCATTATACGCAGATGATTCACACAGCTACTTTTTGA
AA sequence Show only first row Show all	>Potri.001G125800.1 pacid=42790166 polypeptide=Potri.001G125800.1.p locus=Potri.001G125800 ID=Potri.001G125800.1.v4.1 annot-version=v4.1 MSFFTEKTLKKKKRPPRWSHLWLKNTKPLKHALFAMQLQSVSSPPTPTPTPTLTPQQQQQADPNTKLRDKTGTLISNLPDIDRTLLLGDDLLLKILSKLP DSQRNPNSLVCKRWLNLQGRLVRSLKVLDWEFLESGRLLSRFPNLTHVDLLNGCVVRPHDCCVRLSHRVFQMDINSGVSGFLPDWRVCEENLSPVEVVDR GLRVLASGCPNLRKLVVVGASEIGLLSFAEDCLTLQELELHKCNDDALRGIAACMNLQILKLVGNVDGFYGSLVSDIGLTILAQGCKRLVKLELSGCEGS FDGIKAIGQCCQMLEELTICDHRMDCGWLAGLSYCENLKTLRFLSCKRIDPSPGPDEYLGCCPALERLHLRKCQLRDKKSLKALFKVCEAVREIVVQDCW GLDNDMFSMASICRKVKFLSLEGCSLLTTEGLESVLLTWNELQHFRIESCKNIKDGEVSPALSTFFSVLKELRWRPDTRSLLASSLMGTGMGKKGGKFFK KNPRLDHYTQMIHTATF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07670			RNI-like superfamily protein (...		Potri.001G125800 [exp]	0	1
AT3G57990			unknown protein		Potri.001G145400 [exp]	3.46	0.9610
AT1G48570			zinc finger (Ran-binding) fami...		Potri.012G046500 [exp]	4.79	0.9479
AT3G52380		CP33, PDE322	PIGMENT DEFECTIVE 322, chlorop...		Potri.016G068300 [exp]	7.07	0.9638	CP33.2
AT5G02750		SGR9	SHOOT GRAVITROPISM 9, RING/U-b...		Potri.006G216200 [exp]	8.24	0.9595
AT2G40690		SFD1, GLY1	SUPPRESSOR OF FATTY ACID DESAT...		Potri.013G090900 [exp]	8.48	0.9623
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Potri.003G089700 [exp]	10.95	0.9541
AT1G06730			pfkB-like carbohydrate kinase ...		Potri.005G220400 [exp]	12.40	0.9575
AT1G65260		VIPP1, PTAC4	VESICLE-INDUCING PROTEIN IN PL...		Potri.016G099400 [exp]	12.64	0.9560	IM30.2
AT5G11270		OCP3	overexpressor of cationic pero...		Potri.006G251700 [exp]	14.89	0.9582
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Potri.019G100800 [exp]	17.49	0.9385	Pt-RMA1.1

Compare expression of checked genes

Potri.001G125800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.