Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60580 99 / 9e-24 C2H2ZnF C2H2-like zinc finger protein (.1) AT2G45120 92 / 2e-21 C2H2ZnF C2H2-like zinc finger protein (.1) AT1G02030 77 / 3e-16 C2H2ZnF C2H2-like zinc finger protein (.1) AT5G61470 77 / 8e-16 C2H2ZnF C2H2-like zinc finger protein (.1) AT3G19580 75 / 2e-15 C2H2ZnF AZF2 zinc-finger protein 2 (.1.2) AT3G49930 73 / 5e-15 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G49900 67 / 4e-12 C2H2ZnF C2H2 type zinc finger transcription factor family (.1) AT3G53600 62 / 2e-11 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G43170 62 / 2e-11 C2H2ZnF AZF3 zinc-finger protein 3 (.1) AT2G28200 63 / 3e-11 C2H2ZnF C2H2-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G066100 [exp] 104 / 2e-25 AT3G60580 176 / 1e-52 C2H2-like zinc finger protein (.1) Potri.002G143800 [exp] 101 / 3e-24 AT3G60580 199 / 1e-61 C2H2-like zinc finger protein (.1) Potri.003G077200 [exp] 96 / 2e-22 AT3G60580 151 / 2e-43 C2H2-like zinc finger protein (.1) Potri.001G157700 [exp] 94 / 1e-21 AT3G60580 159 / 2e-46 C2H2-like zinc finger protein (.1) Potri.014G066200 [exp] 67 / 3e-12 AT1G02040 129 / 1e-33 C2H2-type zinc finger family protein (.1) Potri.009G089400 [exp] 65 / 6e-12 AT3G19580 120 / 6e-33 zinc-finger protein 2 (.1.2) Potri.002G119300 [exp] 63 / 3e-11 AT1G27730 186 / 8e-59 salt tolerance zinc finger (.1) Potri.014G017300 [exp] 61 / 9e-11 AT1G27730 189 / 4e-60 salt tolerance zinc finger (.1) Potri.009G166200 [exp] 58 / 2e-09 AT4G35280 258 / 4e-85 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008523 [exp] 88 / 1e-19 AT3G60580 107 / 3e-27 C2H2-like zinc finger protein (.1) Lus10009278 [exp] 84 / 7e-19 AT2G45120 161 / 2e-48 C2H2-like zinc finger protein (.1) Lus10004724 [exp] 84 / 2e-18 AT3G60580 108 / 2e-27 C2H2-like zinc finger protein (.1) Lus10015888 [exp] 78 / 1e-16 AT3G60580 126 / 3e-35 C2H2-like zinc finger protein (.1) Lus10028951 [exp] 76 / 3e-15 AT3G60580 117 / 1e-30 C2H2-like zinc finger protein (.1) Lus10038929 [exp] 74 / 4e-15 AT1G02030 101 / 2e-25 C2H2-like zinc finger protein (.1) Lus10027220 [exp] 74 / 5e-15 AT1G02030 99 / 1e-24 C2H2-like zinc finger protein (.1) Lus10031061 [exp] 67 / 9e-13 AT2G45120 74 / 1e-15 C2H2-like zinc finger protein (.1) Lus10015740 [exp] 67 / 3e-12 AT1G02030 104 / 3e-25 C2H2-like zinc finger protein (.1) Lus10003463 [exp] 65 / 1e-11 AT1G26610 112 / 2e-28 C2H2-like zinc finger protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [poplar] [flax] C2H2-zf PF13912 [poplar] [flax] zf-C2H2_6 C2H2-type zinc finger
Representative CDS sequence Show only first row Show all	>Potri.001G125900.2 pacid=42792496 polypeptide=Potri.001G125900.2.p locus=Potri.001G125900 ID=Potri.001G125900.2.v4.1 annot-version=v4.1 ATGGAGAAAACGCGAATCTGCAAGATCTGCAACAGACGGTTTGCCAATGGCAAAGCCATGGGTGGACATATGAGATCTCACCTTGCTAAACTACCCCTTC CTCCAAAACCAATCCCACCGCAAGAAACTTACAACACTCCTAAAAAATCACCACCGTCATCTTCTTCATTAAACTATCCTTTACTAAGCAATAAGCCCGC GCAATCCTCTCGATCTATGAAACAGGAAGTCTCCACTGTTTCAAGACCTAATCTTGCTACTCCTTATGATGGAGAGAGTGAGACGGAGTCAACAAGGGAA CCCACTCGGAGAAGATCTAAAAGGAGCCGTAAATCAGCTGATGAAGTGGCCGAATCAATGGTGAAAGTGACCGAGTCATCAGAGCAGGTAAGTTCCGTAT CTTATTTATTGGCTGAAGAAGATGTTGCTTTGTGTCTCTTAATGCTTTCAAGGGATAACTGGTCAGAAGATGCTAAACAAGTTAAAAAAGAAGTGTGTGA ATACATAAAGGATCATCAACATGTGAATGAGGTTGAAAGTGATGAAAAAGAGGATTATTTGTTTGGTGTTACTCGTGCTAAATACAAATCACAAGGAAAA TTTAAATGTGAAACCTGCAAGAAAGGGTTCCGGTCCTATCAAGCTCTAGGTGGACATAGAGCTAGTCATAAAAAGATAAAAATCCATGAGGAGCACGAAG AAGGTAATGGTAGTGGTTGTGGCGAAGACAATAGAAGTGTTGGGAAAAGAATTTTCAAGTGCCCATTTTGTGAGAAAGTATTTGATTCGGGGCAAGCACT CGGTGGACACAAGAAAGTGCACTTCTCTTACTTGCCTGTGACTAATGCTAAAATCTCCATTAATTTGTTAGATCTCAATGTGCCAGCTCTCGAAGGTACT CATGACGATGGTGAAGTTAGTGAGGCTTGA
AA sequence Show only first row Show all	>Potri.001G125900.2 pacid=42792496 polypeptide=Potri.001G125900.2.p locus=Potri.001G125900 ID=Potri.001G125900.2.v4.1 annot-version=v4.1 MEKTRICKICNRRFANGKAMGGHMRSHLAKLPLPPKPIPPQETYNTPKKSPPSSSSLNYPLLSNKPAQSSRSMKQEVSTVSRPNLATPYDGESETESTRE PTRRRSKRSRKSADEVAESMVKVTESSEQVSSVSYLLAEEDVALCLLMLSRDNWSEDAKQVKKEVCEYIKDHQHVNEVESDEKEDYLFGVTRAKYKSQGK FKCETCKKGFRSYQALGGHRASHKKIKIHEEHEEGNGSGCGEDNRSVGKRIFKCPFCEKVFDSGQALGGHKKVHFSYLPVTNAKISINLLDLNVPALEGT HDDGEVSEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.001G125900 [exp]	0	1
AT4G19010			AMP-dependent synthetase and l...		Potri.003G099700 [exp]	8.48	0.7691	Ptr4CL13
AT5G60390			GTP binding Elongation factor ...		Potri.008G043100 [exp]	29.69	0.8033	ADR12.3
					Potri.002G066300 [exp]	41.56	0.7788
					Potri.003G179301 [exp]	46.73	0.7742
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Potri.003G123700 [exp]	66.97	0.7182
AT1G53708		RTFL9	ROTUNDIFOLIA like 9 (.1)		Potri.002G235101 [exp]	77.29	0.7228
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.010G208100 [exp]	126.89	0.7067
AT1G50670			OTU-like cysteine protease fam...		Potri.001G435500 [exp]	138.20	0.7234
AT1G77690		LAX3	like AUX1 3 (.1)		Potri.005G174000 [exp]	188.04	0.6898	PtrAUX7
AT4G11820		FKP1, EMB2778, ...	FLAKY POLLEN 1, hydroxymethylg...		Potri.003G120400 [exp]	201.49	0.6968

Compare expression of checked genes

Potri.001G125900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.