Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25190 226 / 3e-70 QWRF7 QWRF domain containing 7, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT2G24070 129 / 1e-32 QWRF4 QWRF domain containing 4, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT4G30710 123 / 1e-30 QWRF8 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT3G19570 112 / 7e-27 SCO3, QWRF1 SNOWY COTYLEDON 3, QWRF domain containing 1, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT2G20815 110 / 1e-26 QWRF3 QWRF domain containing 3, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT1G49890 96 / 4e-21 QWRF2 QWRF domain containing 2, Family of unknown function (DUF566) (.1) AT5G43160 88 / 8e-20 QWRF9 QWRF domain containing 9, Family of unknown function (DUF566) (.1) AT3G60000 79 / 5e-16 QWRF6 QWRF domain containing 6, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT2G44190 76 / 9e-15 EMB3116, EDE1, QWRF5 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G103800 [exp] 120 / 1e-29 AT4G30710 261 / 2e-78 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Potri.006G181700 [exp] 120 / 1e-29 AT4G30710 274 / 2e-83 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Potri.001G295800 [exp] 108 / 2e-25 AT1G49890 526 / 4e-180 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.014G017500 [exp] 107 / 5e-25 AT1G49890 282 / 8e-86 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.002G119500 [exp] 103 / 8e-24 AT1G49890 380 / 2e-123 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.013G146100 [exp] 97 / 8e-22 AT2G20815 218 / 1e-63 QWRF domain containing 3, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Potri.009G089800 [exp] 96 / 2e-21 AT1G49890 516 / 4e-176 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.006G000400 [exp] 94 / 9e-21 AT2G44190 220 / 2e-66 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) Potri.016G000300 [exp] 76 / 1e-14 AT2G44190 226 / 1e-68 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009604 [exp] 194 / 2e-58 AT4G25190 153 / 7e-43 QWRF domain containing 7, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Lus10018698 [exp] 114 / 3e-27 AT1G49890 346 / 4e-110 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Lus10018555 [exp] 111 / 2e-26 AT2G20815 222 / 1e-65 QWRF domain containing 3, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Lus10014636 [exp] 110 / 4e-26 AT1G49890 529 / 0.0 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Lus10010779 [exp] 109 / 8e-26 AT4G30710 355 / 3e-114 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Lus10010780 [exp] 108 / 9e-26 AT4G30710 398 / 5e-132 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Lus10033792 [exp] 109 / 1e-25 AT1G49890 587 / 0.0 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Lus10039786 [exp] 107 / 5e-25 AT2G20815 218 / 3e-64 QWRF domain containing 3, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Lus10022176 [exp] 107 / 6e-25 AT4G30710 408 / 1e-134 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Lus10038729 [exp] 104 / 2e-24 AT2G44190 261 / 2e-81 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04484 [poplar] [flax] QWRF QWRF family
Representative CDS sequence Show only first row Show all	>Potri.001G126000.1 pacid=42787981 polypeptide=Potri.001G126000.1.p locus=Potri.001G126000 ID=Potri.001G126000.1.v4.1 annot-version=v4.1 ATGGAATACCCTCTCACGCGTAGACGGCAGCCACCAGCGCCATTGTCACCATCACCGTGCCTAAGTCGAAGTAGAAGTGAAGCCGAAAACAATTCAAGCT CGCTAACCACGAACCGAAGTTTGGTTAATAACCGATCAAAATCAACTACAAGATCAAGAAATGAAAATGTAAACCCTTCATGTAATTATACTACTGGCAC TTCTTTAACTAACATGCACAAGAAACCTAGCAGTCAACATAAGGAGAGCGGAGGCAAAGATGGATTTGTTAAGTTCTTGCACCGAGGCAGTACTAGCCCA CGTAACAGCTCTGCTGCAATTAAGAGGACGAAGTCTTCAGCAGGGTCTTCACAGTCAGCATGGGCATTATCACCTGGACGATCTCCTGTGTTTCCGACAC CAGAGTCATCACCAGGGATTGGTGGAGATAAGAGAGGGAAGGTTAAAGGTAACGGTGGTGGTGGTGGTGGTGGTGGTGCTATGAATAGTGTTTTGAGGTA CTTCAAGCAAAAGAAGGTGAATCCAATCCAAGAAGAGGAGTACCATAGGTATAGGGTTTTGTACAATAGGTTGTTGCAGTGGAGGTTTGTTAATGCTAGG GCTGATGCTGCTATGTCCTATGTGAAGACAGTTGCTGAGGATAAATTATTTCATGTTTGGCTTAGAATCGTCAACACGAGAAATATCATACTAGAAAAGC GAATTCAAATCCGAAAGCTGAAGCACGAGGTCAAATTGTGTCAAATTATCAACCCACAAATGAAACTGCTTAATGAATGGGCAAAATTAGAGGGTAAAAA CTTTGAAGCAGTGGGCAGAGTGACAAGGAAACTATCAGCATTGTCAGTCAAACTCCCTCTTGAAGAAGATGCTAAGGGAGATGTGGAATCAGTCTACATA GCTATTAGCAATGCTGCGCAGGTCATGGATAGCATAGAAGGGACCATAAATAAATTCCTCTCCCAGGTCGAGAAAGTCCTTTATCTGATTACAGAGCTTT CGAGCACACTGCAAAATCAAGATGAAAGCTTGGAGGAAATGGAGAAAACAATAACCGTAGTTGCTAAACTAGTGGCATGGGAGAAAAGTGTGAGAGTACA TCTCTTGCAAATAGGCCAGGATTCAGAGGAAGAGGAAGCTGTCTCAAGACATGATTAA
AA sequence Show only first row Show all	>Potri.001G126000.1 pacid=42787981 polypeptide=Potri.001G126000.1.p locus=Potri.001G126000 ID=Potri.001G126000.1.v4.1 annot-version=v4.1 MEYPLTRRRQPPAPLSPSPCLSRSRSEAENNSSSLTTNRSLVNNRSKSTTRSRNENVNPSCNYTTGTSLTNMHKKPSSQHKESGGKDGFVKFLHRGSTSP RNSSAAIKRTKSSAGSSQSAWALSPGRSPVFPTPESSPGIGGDKRGKVKGNGGGGGGGGAMNSVLRYFKQKKVNPIQEEEYHRYRVLYNRLLQWRFVNAR ADAAMSYVKTVAEDKLFHVWLRIVNTRNIILEKRIQIRKLKHEVKLCQIINPQMKLLNEWAKLEGKNFEAVGRVTRKLSALSVKLPLEEDAKGDVESVYI AISNAAQVMDSIEGTINKFLSQVEKVLYLITELSSTLQNQDESLEEMEKTITVVAKLVAWEKSVRVHLLQIGQDSEEEEAVSRHD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25190		QWRF7	QWRF domain containing 7, Fami...		Potri.001G126000 [exp]	0	1
AT3G54340	MADS	AP3, ATAP3	APETALA 3, K-box region and MA...		Potri.005G118000 [exp]	21.21	0.7285
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Potri.001G238500 [exp]	27.34	0.7510
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.008G034401 [exp]	42.66	0.7231
AT1G52855			unknown protein		Potri.019G104300 [exp]	51.57	0.7248
AT1G10385			Vps51/Vps67 family (components...		Potri.016G063700 [exp]	66.38	0.7005
AT3G11800			unknown protein		Potri.004G146800 [exp]	69.85	0.6390
AT4G37080			Protein of unknown function, D...		Potri.005G136350 [exp]	88.46	0.6794
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Potri.010G137100 [exp]	214.36	0.6302
AT1G33055			unknown protein		Potri.011G149400 [exp]	229.67	0.6458
					Potri.002G146675 [exp]	272.29	0.6318

Compare expression of checked genes

Potri.001G126000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.