Plant FIBer expression Database

Potri.001G126200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G07630 758 / 0 lipid transporters (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G107501
[exp]
108 / 2e-28 AT5G07630 91 / 3e-23 lipid transporters (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027222
[exp]
625 / 0 AT5G07630 557 / 0.0 lipid transporters (.1)
Lus10038931
[exp]
321 / 6e-107 AT5G07630 302 / 7e-99 lipid transporters (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0222 MviN_MATE PF04506 Rft-1 Rft protein
Representative CDS sequence
>Potri.001G126200.1 pacid=42792684 polypeptide=Potri.001G126200.1.p locus=Potri.001G126200 ID=Potri.001G126200.1.v4.1 annot-version=v4.1
ATGTCAAAAGCAGCAGCCAACGTTGCCAGTTTTTCTCACACTTTCAAGTACTTATTGGCTACTCAGTTCTTGTCAAGAGGAATCCCTTTTATTTTCAATT
CCTGGATCGTTAGACACCTTACAGCCGAGGACTATGCGTTATATGCAGTGCAATTTCATCTCTTTGTGACATGTGTGTTGTTTCTTAGTCGAGAAGGATT
CCGGCGAGCCTGCATGAGGGCCGACATTAAATGTGATGGTGCTTCAACTGAGGAATATGCAGCAAAGTTATTAAAAGTAGCTTGGATGACACTCCCTCTT
GGAGTAGTTACAACGATTTCAGCATGTGTTTTTGTTTTCTGGTGGCAAGGATTAACTTATTCTGATCCATACGCACAAGCTATCTTGATCAATGGCTGTG
CATGTATTTTGGAGCTTTTGGCCGAACCCTTGTATATTGTCTCTCAGAATTTGCTATTGCTCAAACTGCGGTTGATCGTTGAAACAGCAGCTACACTTTT
GCGTTGTTTGACAATGTACATCCTGATTGTCAAGCAAACCAGCATGGATAAGGGGATTGTTTTTGCGTTGTCGCAAACTGCATATGGAGCTTGTTTGTTC
TTAGGATATTGGAGTTACTTTGTTCTTTTCCGTGCATTTAGAAGTTCTGTTCTTTTCCCTTTCAGACTAGGAACCATAATGGATTATGACAAGCAGCTCT
CTAGCATGTGTGTTCTGTTCACTCTACAATCCTTTCAAAAGCTTATCCTTCAAGAAGGGGAAAAATTTGTTCTTGTATGGTTGGATACCCCATACAACCA
GGCTGTATATGGACTTGTTGACAAGTTAGGGAGCTTAGTTGTCAGATTGGTGTTTCTTCCATTTGAGGAAAGTTCATATGCTACATTTGCCAGGTCTGCA
TCAGGAAAAGATCCAAACAAAAGCAGGAAACTGGGAAGCTGCCTATCAGAGGCCTTGAAGCTTGTTTTGTTAATTGGTGTTGTATTTATGACATTTGGCC
CAAGTTACTCCTACTCTCTCATCAGAATGTTGTATGGCCGTAAATGGAGTGATGGAGAGGCATCGACAGCCCTCCAGTATTATTGCTTCTATGTCATTGT
CTTGGCTATGAATGGAACTTCCGAAGCATTTCTACATGCTGTTGCAACAGAGAGCCAACTCAAGCGCTCAAATGATTCGTTGCTTGTGTTCTCATTGATA
TATGTAGTGATGAATGTCCTGCTGATAAAGTCAGCTGGTGCTGTTGGCTTGATTCTGGCAAATTCCTTAAATATGATCTTGAGGATTATATACTCTGCAG
TATTCATCAAATACTACTTCCAGGATTCTTCTGCATTTTCTTTTACCAGCTGCTTACCTTCAGGTTGGACAGTTCTGTTGTTTTCTGGTGTAATTACTCT
CATCTCTGAGAAATTATTTCTGGACCACGAAAATTTCTGGCCAACATTTTTAATCCACTTCTCCATCGGCTTAACTTGCTTCTGCATTTCGTCTTTCATC
ATTTACCGCCGCGAGAGACCTTTCATCAACAGAATTATCCGTTTCCGTGATCACATGGACTGA
AA sequence
>Potri.001G126200.1 pacid=42792684 polypeptide=Potri.001G126200.1.p locus=Potri.001G126200 ID=Potri.001G126200.1.v4.1 annot-version=v4.1
MSKAAANVASFSHTFKYLLATQFLSRGIPFIFNSWIVRHLTAEDYALYAVQFHLFVTCVLFLSREGFRRACMRADIKCDGASTEEYAAKLLKVAWMTLPL
GVVTTISACVFVFWWQGLTYSDPYAQAILINGCACILELLAEPLYIVSQNLLLLKLRLIVETAATLLRCLTMYILIVKQTSMDKGIVFALSQTAYGACLF
LGYWSYFVLFRAFRSSVLFPFRLGTIMDYDKQLSSMCVLFTLQSFQKLILQEGEKFVLVWLDTPYNQAVYGLVDKLGSLVVRLVFLPFEESSYATFARSA
SGKDPNKSRKLGSCLSEALKLVLLIGVVFMTFGPSYSYSLIRMLYGRKWSDGEASTALQYYCFYVIVLAMNGTSEAFLHAVATESQLKRSNDSLLVFSLI
YVVMNVLLIKSAGAVGLILANSLNMILRIIYSAVFIKYYFQDSSAFSFTSCLPSGWTVLLFSGVITLISEKLFLDHENFWPTFLIHFSIGLTCFCISSFI
IYRRERPFINRIIRFRDHMD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G07630 lipid transporters (.1) Potri.001G126200
[exp]
0 1
AT5G11800 ATKEA6, KEA6 K+ efflux antiporter 6, ARABID... Potri.018G054100
[exp]
1.00 0.9335 ATKEA4.2
AT3G54860 ATVPS33 VACUOLAR PROTEIN SORTING 33, S... Potri.008G035600
[exp]
2.82 0.9051 Pt-VPS33.2
AT1G18340 basal transcription factor com... Potri.005G176600
[exp]
3.46 0.8731
AT2G14170 ALDH6B2 aldehyde dehydrogenase 6B2 (.... Potri.005G147700
[exp]
3.46 0.8767
AT5G54650 ATFH5, Fh5 FORMIN HOMOLOGY 5, formin homo... Potri.001G416100
[exp]
4.00 0.8599
AT1G02145 EBS4, ALG12 EMS-MUTAGENIZED BRI1\(BRASSINO... Potri.002G139200
[exp]
8.06 0.8618
AT4G11450 Protein of unknown function (D... Potri.001G104200
[exp]
8.48 0.8571
AT4G31150 endonuclease V family protein ... Potri.018G001000
[exp]
9.21 0.8745
AT3G04490 unknown protein Potri.019G019100
[exp]
10.48 0.8638
AT5G05970 NEDD1 NEURAL PRECURSOR CELL EXPRESSE... Potri.008G060700
[exp]
10.67 0.8190

Potri.001G126200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.