Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25170 184 / 2e-55 Uncharacterised conserved protein (UCP012943) (.1), Uncharacterised conserved protein (UCP012943) (.2) AT5G61490 107 / 4e-27 Uncharacterised conserved protein (UCP012943) (.1) AT5G61495 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G107400 [exp] 377 / 1e-130 AT4G25170 190 / 1e-57 Uncharacterised conserved protein (UCP012943) (.1), Uncharacterised conserved protein (UCP012943) (.2) Potri.014G057200 [exp] 100 / 5e-24 AT5G61490 86 / 1e-19 Uncharacterised conserved protein (UCP012943) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009654 [exp] 178 / 7e-53 AT4G25170 174 / 1e-51 Uncharacterised conserved protein (UCP012943) (.1), Uncharacterised conserved protein (UCP012943) (.2) Lus10009018 [exp] 166 / 4e-46 AT5G61510 513 / 1e-178 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10028185 [exp] 57 / 1e-08 AT2G44970 640 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10014803 [exp] 43 / 0.0003 AT5G54540 139 / 8e-39 Uncharacterised conserved protein (UCP012943) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G126300.1 pacid=42789642 polypeptide=Potri.001G126300.1.p locus=Potri.001G126300 ID=Potri.001G126300.1.v4.1 annot-version=v4.1 ATGTTCGGTGGAAGCGGAGGAGGTAGCATGTTAAGGGTGGTTGGTCGGGCTGTTGCTAGGGCTGGTGTTACTAATTTCCAAGAACCTATCTCTACTAACA CATTATCTTCTAACACTACTACTACTACTGTTACTTCACCAAGGGCAACTAGAAAGCTCAATTCTCTTAATAATGATAATAATACTTTGAGTCTTTCTTC TTCTGGTTCTGTTTTGAGTGTTCCTATATCTGCTAATTCTGGTGGACCCATTTCTACTTGGTGGCCTTCTTTTACTGGTTCTTACCCTGATGATTATGAA TGGGTTTCTGTTGATGAAAGTGAAGACGAGAGGCTTGTTGGCTTTAGTGATGATTTTGTTCTGGGTCCTGTTCCTTCCATGGATGAAGTTCACGATGCTG TCACTGCACTTACGCACGTATTTGATGCCCCCTTGTATTCCCAACTCATTAGAGATAAATTTGCATGCACTGTGGACAAGGATTTAGCTGATCAAATTTC AAGCCCGGCCGTACTGAGCCAAGTTTCTTCTGTTGGGTCAGATTTCGATTGGAAGGAGCCTTCTCCTGCTCTGTGTAATCAAAGAGCATTGCACTCTTAT GGATCTCACACGGTTCATGAAGCTTTCCATTTGTTGCTGACAGAACCATCTGTTCAGAAAATGGTTGTCTCGTTATCATCCGATAAAGCTGTTTGGGATG CTGTTTTGAATAATGCTGTTGTTCAAGAGCTGCGGGAAACCTACTATGCAGATGAAAACACTGATCCACTAACTTCTGAGAGCTCAGACGAGACTGGTGA GGAAACCAATCCAGCTTTGAATTTTGTGAAGTGGATATTTGACAACACAAGAGCGAGGGTTGTGGAAGTGATCGAGACAGTAACAAAGCTGGTGAACGAG CTGTTTAAGCCACCAGCTGATGAGAAGACATCAGCAGGAGACAAGGATCCATTTGAGGACAAGCTGAGACGCTCGTTCCTGCTTTCCATTATGGTCCTGC TGATCGTGGTTGTGACTCGAGTCCAGAAGGCTTGA
AA sequence Show only first row Show all	>Potri.001G126300.1 pacid=42789642 polypeptide=Potri.001G126300.1.p locus=Potri.001G126300 ID=Potri.001G126300.1.v4.1 annot-version=v4.1 MFGGSGGGSMLRVVGRAVARAGVTNFQEPISTNTLSSNTTTTTVTSPRATRKLNSLNNDNNTLSLSSSGSVLSVPISANSGGPISTWWPSFTGSYPDDYE WVSVDESEDERLVGFSDDFVLGPVPSMDEVHDAVTALTHVFDAPLYSQLIRDKFACTVDKDLADQISSPAVLSQVSSVGSDFDWKEPSPALCNQRALHSY GSHTVHEAFHLLLTEPSVQKMVVSLSSDKAVWDAVLNNAVVQELRETYYADENTDPLTSESSDETGEETNPALNFVKWIFDNTRARVVEVIETVTKLVNE LFKPPADEKTSAGDKDPFEDKLRRSFLLSIMVLLIVVVTRVQKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25170			Uncharacterised conserved prot...		Potri.001G126300 [exp]	0	1
AT2G32540		ATCSLB4, ATCSLB...	CELLULOSE SYNTHASE LIKE B4, ce...		Potri.014G155401 [exp]	4.24	0.8954
AT5G44010			unknown protein		Potri.014G192200 [exp]	4.47	0.9141
					Potri.019G129466 [exp]	5.09	0.8761
AT5G05800			unknown protein		Potri.001G243108 [exp]	7.34	0.9138
					Potri.006G095200 [exp]	8.12	0.8914
AT4G28220		NDB1	NAD(P)H dehydrogenase B1 (.1)		Potri.013G147200 [exp]	11.31	0.8940
AT5G01310	bHLH	APTX, bHLH140	APRATAXIN-like (.1)		Potri.016G120200 [exp]	11.53	0.8945
AT1G10417			unknown protein		Potri.008G190600 [exp]	12.96	0.8913
AT1G32790		CID11	CTC-interacting domain 11 (.1....		Potri.001G448800 [exp]	13.60	0.8965
					Potri.003G070000 [exp]	13.60	0.8612

Compare expression of checked genes

Potri.001G126300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.